Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B01_e386_03.seq
         (1520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.18 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   5.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   5.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   6.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 0.18
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 344 VTGGGVPVTISGTNSRLRDDTEQKNPISLDPTRGSNPRPQNDSRTVI 204
           V G G   TISG   +L++ +     I++DP +GS   P +DS+  +
Sbjct: 211 VAGAGTGGTISGIGRKLKELSPNIKIIAVDP-KGSILDPSSDSQNEV 256


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 256 SSDIGFFCSVSSRSLE-FVPDIVTGTPPPVTSETELSSAKCGWCSSLFHLCL 408
           SS+     S+  +S E +VPDIV  +   V  + E+ S +C   +S   LC+
Sbjct: 99  SSEFDSINSIRVKSYEIWVPDIVMHSVTSVGIDLEMPSVECIVFNSGTILCV 150


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 197 AIVLRFDCRSEVSGSIPG 250
           A+  R++C    +GSIPG
Sbjct: 57  ALRFRYECEGRSAGSIPG 74


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 197 AIVLRFDCRSEVSGSIPG 250
           A+  R++C    +GSIPG
Sbjct: 57  ALRFRYECEGRSAGSIPG 74


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = +3

Query: 210 GSTVVLRSRVRSPGRVK*YWVFLLSIIPESGICARY---SDRHAAPCHI*DGTKLGEMW 377
           G+ V  +SR    G     W FLL ++ +   C RY   ++R      + D   +  +W
Sbjct: 445 GAAVKRKSR---EGSTTYLWEFLLKLLQDREYCPRYIKWTNRERGVFKLVDSKAVSRLW 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,481
Number of Sequences: 438
Number of extensions: 6518
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53233125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)