Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A12_e473_02.seq
         (1545 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater...   101   7e-20
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|...    51   9e-05
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo...    44   0.008
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p...    41   0.10 

>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
           Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
           (Silk moth)
          Length = 273

 Score =  101 bits (241), Expect = 7e-20
 Identities = 63/164 (38%), Positives = 79/164 (48%), Gaps = 1/164 (0%)
 Frame = +2

Query: 71  PXXXAAGGV-KKQXVGKPRNYDLGNGVLRFSKSRMYHKKAIYKXVGKKNPXAEKPXXXXX 247
           P    AG + KK+   KPRNYDLGNGV+RFSKS+M+HKKA YK +GKKNP  EKP     
Sbjct: 12  PAAAPAGALTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTV 71

Query: 248 XXXXXXXXKEWRHSYSPAEKXEIILPHSGQDQGSXXWQEFX*TCA*DADLTSLPXQCAFX 427
                   K       P ++ +   P   + + S   + F            +   C   
Sbjct: 72  VVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILL 131

Query: 428 WXGRHXXKRVVLXGVXAXXTATLRWTFLLFNACXLRRIPXXYVI 559
             GRH  KRVVL G+       +   F  FN+C LRRIP  YVI
Sbjct: 132 -AGRHAGKRVVLVGILPSGLLLVTGPF-AFNSCPLRRIPQRYVI 173


>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
           Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
           melanogaster (Fruit fly)
          Length = 262

 Score = 50.8 bits (116), Expect = 9e-05
 Identities = 47/165 (28%), Positives = 63/165 (38%), Gaps = 2/165 (1%)
 Frame = +2

Query: 71  PXXXAAGGVKKQXVGK--PRNYDLGNGVLRFSKSRMYHKKAIYKXVGKKNPXAEKPXXXX 244
           P   A    K    GK  P N  L  G+LR+SK++MY ++A+Y+   KK+P  EK     
Sbjct: 3   PIEKAKKVAKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPI 62

Query: 245 XXXXXXXXXKEWRHSYSPAEKXEIILPHSGQDQGSXXWQEFX*TCA*DADLTSLPXQCAF 424
                    K         +K +   P     +       F      +      P     
Sbjct: 63  KKVKKIGGPKNGGERTVFLKKSKASYPTKTFVKKRPSKANFS-EHKRNTRRNLTPGTVLI 121

Query: 425 XWXGRHXXKRVVLXGVXAXXTATLRWTFLLFNACXLRRIPXXYVI 559
              GRH  KRVVL  V A     +   F L N+C LRR+   YVI
Sbjct: 122 LLAGRHQGKRVVLLKVLASGLLLVTGPFAL-NSCPLRRVSQRYVI 165



 Score = 49.2 bits (112), Expect = 3e-04
 Identities = 26/76 (34%), Positives = 39/76 (51%)
 Frame = +3

Query: 162 KAGCTTRRLYIXLSXRRTRXLKSPXIATVXXKQIEGEKNGGTRTVLLKSXKSFYPTQDKI 341
           KA    RR    L  +++  ++   +     K+I G KNGG RTV LK  K+ YPT+  +
Sbjct: 35  KAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSKASYPTKTFV 94

Query: 342 RXRXXGKSSSKHVRRT 389
           + R    + S+H R T
Sbjct: 95  KKRPSKANFSEHKRNT 110


>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
           Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
           sapiens (Human)
          Length = 288

 Score = 44.4 bits (100), Expect = 0.008
 Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
 Frame = +3

Query: 84  QPAVSRSRXLANRGIMTSETVYSVSPKAGCTTRRLYIXLSXRRTRXLKSPXIATVXXKQI 263
           +P  SR+  L  RGI         S KA    +R Y     +  +  K   +ATV  K +
Sbjct: 41  KPHCSRNPVLV-RGIGRYSRSAMYSRKA--MYKRKYSAAKSKVEKKKKEKVLATVT-KPV 96

Query: 264 EGEKNGGTRTVLLKSXKSFYPTQDKIR--XRXXGKSSSKHVRR 386
            G+KNGGTR V L+    +YPT+D  R       K  S+HVR+
Sbjct: 97  GGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRK 139


>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
           pacificus|Rep: 60S ribosomal protein L6 - Ixodes
           pacificus (western blacklegged tick)
          Length = 268

 Score = 40.7 bits (91), Expect = 0.10
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 71  PXXXAAGGVKKQXV-GKPRNYDLGNGVLRFSKSRMYHKKAIYKXVGKKNPXAEK 229
           P   AA   KK  V G P+N+ L  GV  FS+S+M+HK+ ++K V    P  EK
Sbjct: 8   PKKAAAPDAKKAVVPGVPKNHKLPGGVWLFSRSKMFHKRGLFK-VKHAAPTKEK 60



 Score = 37.1 bits (82), Expect = 1.2
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 246 VXXKQIEGEKNGGTRTVLLKSXKSFYPTQD 335
           V  K+++GEKNGG R + LK  +  YPT+D
Sbjct: 67  VTVKRVKGEKNGGKRVLPLKKERRSYPTED 96


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,714,601
Number of Sequences: 1657284
Number of extensions: 6942411
Number of successful extensions: 12197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12172
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 165344584750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)