Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A12_e473_02.seq
         (1545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.25 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   4.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.9 bits (59), Expect = 0.25
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 2    DPPGCRNSXTRYGSTTAQGGWRNPXXXAAGGVKKQXVGKPRN 127
            DP  C     +YGS   Q G       + G V ++ VG  RN
Sbjct: 1809 DPANCAPEEDQYGSQYGQYGAPYDHYGSRGSVGRRSVGSARN 1850


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 115 QTEEL*PRKRCTPFLQKQDVPQEGYI 192
           +T  L PRKRC   L+  ++ + G I
Sbjct: 460 ETLILPPRKRCKMILESMEIERNGLI 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,946
Number of Sequences: 438
Number of extensions: 2042
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54190125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)