Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A12_e473_02.seq
         (1545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    32   1.2  
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    31   1.5  
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    31   1.5  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 101 KQXVGKP-RNYDLGNGVLRFSKSRMYHKKAIYKXVGK 208
           KQ   K  RN DL  GV ++S+S+MYHK+ ++    K
Sbjct: 4   KQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAK 40


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 122 RNYDLGNGVLRFSKSRMYHKKAIYKXVGK 208
           RN DL  GV ++S+S+MYHK+ ++    K
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAK 40


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 122 RNYDLGNGVLRFSKSRMYHKKAIYKXVGK 208
           RN DL  GV ++S+S+MYHK+ ++    K
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAK 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,404
Number of Sequences: 28952
Number of extensions: 167110
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4144594560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)