Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_A11_e465_01.seq
(1548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.56
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.56
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.3
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 9.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.56
Identities = 32/140 (22%), Positives = 36/140 (25%), Gaps = 11/140 (7%)
Frame = +1
Query: 1111 PPSYREFPDRPCLGXGPXQXXLPKXXPGP--------PXXARXRGGGGPXFXXPVPXGAG 1266
PP R +P +G G LP P P P + R P P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 1267 FRAQXXXANPXSRXXXPRRXRGGRXXAGPPPXXXFGEXGXRGAPPXTXPXG---GXPRGA 1437
+ S P GR PP G PP P P
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIPGRSAPALPP---LGNASRTSTPPVPTPPSLPPSAPPSL 431
Query: 1438 PPXPXXXTPXGXPXGGXXPP 1497
PP P G P PP
Sbjct: 432 PPSAPPSLPMGAPAAPPLPP 451
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
Frame = +1
Query: 1333 GRXXAGPPPXXXFGEXGXRGAPPXTXPXGGXPRGAPPX-PXXXTPXGXPXGG----XXPP 1497
GR PPP G + P + P PP P P P G PP
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP 416
Query: 1498 XGXPGXXXPGPP 1533
P P P
Sbjct: 417 VPTPPSLPPSAP 428
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/42 (28%), Positives = 14/42 (33%)
Frame = +2
Query: 1373 GNXAXGAXPPXPXPGXAXPGGPPLXXXXXPXGXXRXGXXPPP 1498
GN + + PP P P P PP P PP
Sbjct: 407 GNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.56
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +2
Query: 1340 PXPGPRPXXXSGNXAXGAXPPXPXPGXAXPGGPP 1441
P P P P G PP P PG A G PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +1
Query: 1393 APPXTXPXGGXPRGAPPXPXXXTPXGXPXGGXXPPXGXPGXXXPGPP 1533
+PP P P AP P P GG PP PG GPP
Sbjct: 731 SPPPPPPAVIVPTPAP-APIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -2
Query: 1436 APRGXPPXGXVXGGAPLXPXSPNXXXGGGPAXXRPP 1329
AP PP + GG P P P G P PP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -2
Query: 1442 GGAPRGXPPXGXVXGGAPLXPXSPNXXXGGGPAXXRP 1332
GG P PP G G P P P GG P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/46 (28%), Positives = 13/46 (28%)
Frame = +1
Query: 1396 PPXTXPXGGXPRGAPPXPXXXTPXGXPXGGXXPPXGXPGXXXPGPP 1533
PP P APP P P P P P PP
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +2
Query: 1331 GAXPXPGPRPXXXSGNXAXGAXPPXPXPGXAXPGGPPLXXXXXPXGXXRXGXXPPP 1498
GA P P P GA PP P P A P P P G P P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGA-PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +1
Query: 1390 GAPPXTXPXGGXPRGAPPXPXXXTPXGXPXGGXXPPXGXPGXXXPGP-PXXG 1542
G PP P G P PP P P P G PP P P P P G
Sbjct: 1177 GIPPVPKPAAGVP-PVPP-PSEAPPVPKPSVG-VPPVPPPSTAPPVPTPSAG 1225
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 593 IKFTFKLSCLFFNYAKSSIEMQFFFLQNAMYVHFMQFFLKCFCI 724
+ F+F S LFF S I + +F + +HF+ FF C C+
Sbjct: 127 LSFSFSFSFLFF---LSQIFIVYF--SSFPILHFLFFFFLCVCV 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,322,685
Number of Sequences: 5004
Number of extensions: 71875
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 870174386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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