Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_A10_e457_02.seq
(1515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 149 4e-36
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 146 3e-35
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 94 2e-19
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 60 3e-09
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 60 6e-09
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 31 2.4
09_02_0082 - 4060018-4061604 30 4.2
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 29 7.3
07_03_0039 - 12718972-12720699 29 7.3
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 149 bits (362), Expect = 4e-36
Identities = 63/112 (56%), Positives = 88/112 (78%)
Frame = +2
Query: 176 YKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 355
+K +H+ E+R+ E +IR KY DR+PVIVEKA ++ + D+DKKKYLVP+DLTVGQF +++
Sbjct: 6 FKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVV 65
Query: 356 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 511
RKRI L PE A+F FV N +PPT+A M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 66 RKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 146 bits (355), Expect = 3e-35
Identities = 63/112 (56%), Positives = 86/112 (76%)
Frame = +2
Query: 176 YKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 355
+K EH E+R+ E +IR KY DR+PVIVEKA K + ++DKKKYLVP+DLTVGQF +++
Sbjct: 170 FKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVV 229
Query: 356 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 511
RKRI L PE A+F FV N +PPT++ M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 230 RKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 281
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 94.3 bits (224), Expect = 2e-19
Identities = 39/69 (56%), Positives = 54/69 (78%)
Frame = +2
Query: 305 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYI 484
+YLVP+DLTVGQF +++RKRI L E A+F FV N +PPT+A M ++Y+E+ DED FLY+
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYM 1943
Query: 485 AFSDENVYG 511
+S EN +G
Sbjct: 1944 TYSGENTFG 1952
Score = 54.0 bits (124), Expect = 3e-07
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +2
Query: 197 EKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKK 307
E+R+ E +IR KYPDR+PVIVEKA ++ + D+DKKK
Sbjct: 1806 ERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKK 1842
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 60.5 bits (140), Expect = 3e-09
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = +2
Query: 203 RKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPE 382
R+ EGE+ RR + VIVEK ++ L +++K+K +HL P
Sbjct: 192 REEEGERERR---GKGQVIVEKFSRSNLPEMEKRK-------------------LHLSPG 229
Query: 383 DALFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 511
ALF FVNN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 230 TALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 273
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 59.7 bits (138), Expect = 6e-09
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +2
Query: 356 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 511
++++HL P ALF FVNN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 87
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = -3
Query: 514 ISINIFIRKCYVEKEILVVMLLV--ERTHSCRCWWNHIVHEKEKRVLGTKVNTFSNQEVK 341
+++ ++I+ C ++V+ +LV + + W N IV+ R L K+N +S+ ++
Sbjct: 299 VNLYLYIQLCDPRARLVVLPILVLGDSDSNSPEWLNQIVNRTRTRCLANKLNPYSDMTMR 358
Query: 340 LT 335
L+
Sbjct: 359 LS 360
>09_02_0082 - 4060018-4061604
Length = 528
Score = 30.3 bits (65), Expect = 4.2
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +1
Query: 1189 LGXAXSQSTXGPXNLREPXPXKXKPGXLAXSXPFXPPPXP 1308
L A ++T P LR P P P LA P P P P
Sbjct: 388 LSSAMPRATTAPLALRGPAPHLRVPRMLAPPIPMPPAPAP 427
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 29.5 bits (63), Expect = 7.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 179 KEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLV 316
KEE + EK++ KI++ P R EK P G K+ ++V
Sbjct: 654 KEEPTSEKKQPVSAKIKKTVPKRTSGTKEKKPDTDQGGKRKRNWMV 699
>07_03_0039 - 12718972-12720699
Length = 575
Score = 29.5 bits (63), Expect = 7.3
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 314 VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNV-IPPTS 427
VPS L F L+R+ + P + L FF+ ++ +PPT+
Sbjct: 80 VPSSLRTSAFPSLLRRHLAFHPLNELPFFLESIGLPPTT 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,381,218
Number of Sequences: 37544
Number of extensions: 646078
Number of successful extensions: 1370
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -