Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A10_e457_02.seq
         (1515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...   207   1e-53
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...   207   1e-53
Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical pr...    83   4e-16
U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical p...    30   3.7  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    29   6.5  
Z68301-9|CAA92628.1|  456|Caenorhabditis elegans Hypothetical pr...    29   8.6  
Z68299-8|CAA92615.1|  456|Caenorhabditis elegans Hypothetical pr...    29   8.6  

>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score =  207 bits (506), Expect = 1e-53
 Identities = 93/112 (83%), Positives = 104/112 (92%)
 Frame = +2

Query: 176 YKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 355
           YKEE++FEKR+ EG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQFYFLI
Sbjct: 5   YKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLI 64

Query: 356 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 511
           RKRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 65  RKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score =  207 bits (506), Expect = 1e-53
 Identities = 93/112 (83%), Positives = 104/112 (92%)
 Frame = +2

Query: 176 YKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 355
           YKEE++FEKR+ EG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQFYFLI
Sbjct: 5   YKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLI 64

Query: 356 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 511
           RKRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 65  RKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116


>Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical
           protein ZK593.6 protein.
          Length = 130

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 39/114 (34%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
 Frame = +2

Query: 176 YKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 352
           +KE   F +R+ + E+IR + P++VPVI+E+    R L  +D+ K+LVP  +TV +   +
Sbjct: 17  FKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSI 76

Query: 353 IRKRIHLRPEDALFFFVN-NVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 511
           +R+R+ L P+ A F  VN   +   S +M +LY +  D D F+Y+ ++ +  +G
Sbjct: 77  VRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130


>U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical
           protein K12D9.12 protein.
          Length = 831

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 165 IRRFFLRNNLTKKLLFSSTQSTATCFLFLPSCRIXCS 55
           ++  F  N+  KK +F+ T+ T+    F P C + C+
Sbjct: 364 LQNVFDSNSCEKKCMFNYTEITSKTIQFFPKCEVVCA 400


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
            protein F54A3.1 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = -3

Query: 1207 GXGPRPKXXGXVRGAXPXAGXPXRGAPSLKG--XXPXRDXPXP-FPVXSL 1067
            G   RP      R A P +  P R APS K     P R  P P  PV S+
Sbjct: 231  GAPKRPSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPSPKAPVASV 280


>Z68301-9|CAA92628.1|  456|Caenorhabditis elegans Hypothetical
           protein T04B2.5 protein.
          Length = 456

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 267 FSTITGTRSGYFLRIFSPSVFLFSKECSSLYWNFIRRFFLRNNLTKKLL 121
           F    GT +G  L +   +    S EC   YW+   + FLR +  K+LL
Sbjct: 159 FDWFIGTSTGSMLALSMVNKISIS-ECFFQYWDMKSQIFLRGSTVKRLL 206


>Z68299-8|CAA92615.1|  456|Caenorhabditis elegans Hypothetical
           protein T04B2.5 protein.
          Length = 456

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 267 FSTITGTRSGYFLRIFSPSVFLFSKECSSLYWNFIRRFFLRNNLTKKLL 121
           F    GT +G  L +   +    S EC   YW+   + FLR +  K+LL
Sbjct: 159 FDWFIGTSTGSMLALSMVNKISIS-ECFFQYWDMKSQIFLRGSTVKRLL 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,416,278
Number of Sequences: 27780
Number of extensions: 557309
Number of successful extensions: 1261
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4348758262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)