Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A09_e449_01.seq
         (1512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               31   2.4  
SB_33516| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.6  
SB_41011| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_31700| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=6.8)            29   9.7  
SB_12908| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)                   29   9.7  

>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 1349 GSPPRXXTPXXNPPXXGGXPPPP 1281
            G+PP    P   PP  GG PPPP
Sbjct: 312  GAPPPPPPPPPPPPGDGGAPPPP 334


>SB_33516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 95  SYIQQPSCRIXCSPGDTTSX*ERPPPR 15
           SY+  P+    CSPGD     ERPPPR
Sbjct: 38  SYLVDPARSNSCSPGDPLVL-ERPPPR 63


>SB_41011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 92  YIQQPSCRIXCSPGDTTSX*ERPPPR 15
           Y+Q+ +    CSPGD     ERPPPR
Sbjct: 36  YLQKKNASNSCSPGDPLVL-ERPPPR 60


>SB_31700| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=6.8)
          Length = 126

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = -2

Query: 113 PKRRGFSYIQQPSCRIXCSPGDTTSX*ERPPPR 15
           P   GFS     S    CSPGD     ERPPPR
Sbjct: 19  PASPGFSTESPRSISNSCSPGDPLVL-ERPPPR 50


>SB_12908| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
          Length = 283

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 101 GFSYIQQPSCRIXCSPGDTTSX*ERPPPR 15
           G  YI+Q      CSPGD     ERPPPR
Sbjct: 150 GNKYIKQWIASNSCSPGDPLVL-ERPPPR 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,889,485
Number of Sequences: 59808
Number of extensions: 346568
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4906390786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)