Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_A09_e449_01.seq
(1512 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.30
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.30
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.30
AC006605-7|AAK85440.1| 107|Caenorhabditis elegans Hypothetical ... 34 0.30
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 1.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 2.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 2.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 2.8
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 8.6
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.9 bits (74), Expect = 0.30
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -2
Query: 1382 PXKGXXKKXXXGSPPRXXTPXXNPPXXGGXPPPP 1281
P G GSPP T PP GG PPPP
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Score = 31.1 bits (67), Expect = 2.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 1382 PXKGXXKKXXXGSPPRXXTPXXNPPXXGGXPPPP 1281
P KG GSPP PP G PPPP
Sbjct: 242 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 275
Score = 29.5 bits (63), Expect = 6.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 1376 KGXXKKXXXGSPPRXXTPXXNPPXXGGXPPPP 1281
+G + GSPP P +PP G PPP
Sbjct: 226 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPP 257
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.9 bits (74), Expect = 0.30
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -2
Query: 1382 PXKGXXKKXXXGSPPRXXTPXXNPPXXGGXPPPP 1281
P G GSPP T PP GG PPPP
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Score = 31.1 bits (67), Expect = 2.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 1382 PXKGXXKKXXXGSPPRXXTPXXNPPXXGGXPPPP 1281
P KG GSPP PP G PPPP
Sbjct: 263 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 296
Score = 29.5 bits (63), Expect = 6.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 1376 KGXXKKXXXGSPPRXXTPXXNPPXXGGXPPPP 1281
+G + GSPP P +PP G PPP
Sbjct: 247 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPP 278
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.9 bits (74), Expect = 0.30
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -2
Query: 1382 PXKGXXKKXXXGSPPRXXTPXXNPPXXGGXPPPP 1281
P G GSPP T PP GG PPPP
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Score = 31.1 bits (67), Expect = 2.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 1382 PXKGXXKKXXXGSPPRXXTPXXNPPXXGGXPPPP 1281
P KG GSPP PP G PPPP
Sbjct: 248 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 281
Score = 29.5 bits (63), Expect = 6.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 1376 KGXXKKXXXGSPPRXXTPXXNPPXXGGXPPPP 1281
+G + GSPP P +PP G PPP
Sbjct: 232 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPP 263
>AC006605-7|AAK85440.1| 107|Caenorhabditis elegans Hypothetical
protein C07H6.2 protein.
Length = 107
Score = 33.9 bits (74), Expect = 0.30
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 43 VVSPGLQXIRHEGCCIYEKPRRF-GXXXXXXXXXXXXHCFGHVEKKK 180
V + G+ + + CCIY+KP+ + HC GHVE KK
Sbjct: 53 VDNEGMGKKKSKCCCIYKKPKNWQDSSSDSDSDCETGHCRGHVEHKK 99
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 31.5 bits (68), Expect = 1.6
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Frame = -2
Query: 1424 PXPRGGXXG--GXXXXPXKGXXKKX----XXGSPPRXXTPXXNPPXXGGXPPPP 1281
P P GG G G P G + G PPR P PP G PPPP
Sbjct: 1560 PPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPPPP 1613
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 1349 GSPPRXXTPXXNPPXXGGXPPPP 1281
G PP P PP GG PPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPP 746
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 1349 GSPPRXXTPXXNPPXXGGXPPPP 1281
G PP P PP GG PPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPP 762
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 1349 GSPPRXXTPXXNPPXXGGXPPPP 1281
G PP P PP GG PPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPP 746
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 1349 GSPPRXXTPXXNPPXXGGXPPPP 1281
G PP P PP GG PPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPP 762
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 1349 GSPPRXXTPXXNPPXXGGXPPPP 1281
G PP P PP GG PPPP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPP 329
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 1349 GSPPRXXTPXXNPPXXGGXPPPP 1281
G PP P PP GG PPPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPP 345
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -1
Query: 1416 PGGGXRGXXXXPXERGXQKXXXRFPPPXXNXXXKPPXXGGGAXPP 1282
PGGG G G RFPPP PP GGG P
Sbjct: 188 PGGGGGGMGGGGGSGGSGGGSGRFPPP------PPPYGGGGRRRP 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,407,813
Number of Sequences: 27780
Number of extensions: 296778
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4360398082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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