Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_A08_e441_02.seq
(1466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 247 3e-66
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 202 7e-53
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 116 8e-27
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 98 3e-21
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 52 3e-07
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 51 5e-07
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 46 1e-05
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 44 5e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 42 3e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 39 0.002
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 37 0.006
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 37 0.008
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 37 0.008
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 37 0.008
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 37 0.008
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 36 0.014
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 33 0.075
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.075
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 33 0.099
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 31 0.40
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 28 3.7
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 4.9
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 4.9
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 27 8.6
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 8.6
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 247 bits (605), Expect = 3e-66
Identities = 116/133 (87%), Positives = 124/133 (93%)
Frame = +3
Query: 129 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 308
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 309 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSXDRERIGEAREELMRMLSEDELRDAV 488
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDS DRERI EA EEL RML+EDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120
Query: 489 LLIFANKQDLPNA 527
LL+FANKQDLPNA
Sbjct: 121 LLVFANKQDLPNA 133
Score = 76.6 bits (180), Expect = 8e-15
Identities = 34/41 (82%), Positives = 36/41 (87%)
Frame = +1
Query: 520 PMQMNAAXITDKLGLHSLRNRNWYIQATCATSXDGLYEGLD 642
P MNAA ITDKLGLHSLR+R WYIQATCATS DGLYEGL+
Sbjct: 131 PNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLE 171
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 202 bits (494), Expect = 7e-53
Identities = 94/129 (72%), Positives = 106/129 (82%)
Frame = +3
Query: 141 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 320
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 321 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSXDRERIGEAREELMRMLSEDELRDAVLLIF 500
VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL+
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVL 128
Query: 501 ANKQDLPNA 527
ANKQDLP A
Sbjct: 129 ANKQDLPGA 137
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +1
Query: 520 PMQMNAAXITDKLGLHSLRNRNWYIQATCATSXDGLYEGLDLALQSAEXR 669
P ++ A ITD L L L++R W +Q TCA + DGL EGL Q+A+ +
Sbjct: 135 PGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAKLK 184
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 116 bits (279), Expect = 8e-27
Identities = 54/120 (45%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
Frame = +3
Query: 171 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 347
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 348 IRPLWRHYFQNTQGLIFVVDSXDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNA 527
+R W++YF++T+ +I+VVDS D R+ E R L +L E++L +L+ ANK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 97.9 bits (233), Expect = 3e-21
Identities = 47/118 (39%), Positives = 69/118 (58%)
Frame = +3
Query: 174 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 353
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 354 PLWRHYFQNTQGLIFVVDSXDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNA 527
LWR YF G++++VD D ER+ E++ EL +L+ +EL LI NK D P A
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGA 136
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 51.6 bits (118), Expect = 3e-07
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Frame = +3
Query: 180 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 344
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 345 KIRPLWRHYFQNTQGLIFVVDSXDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPN 524
+ R + Y++ G++ + D D++ R + + + ++ NK D +
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSN-VEQHASENVYKILIGNKCDCED 128
Query: 525 ANERSRDNG 551
+ S + G
Sbjct: 129 QRQVSFEQG 137
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 50.8 bits (116), Expect = 5e-07
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Frame = +3
Query: 183 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 347
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 348 IRPLWRHYFQNTQGLIFVVDSXDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 518
R + Y++ G+I V D D++ ++ L + + L+ NK D+
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 46.0 bits (104), Expect = 1e-05
Identities = 27/134 (20%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Frame = +3
Query: 165 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 329
F ++ +++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 330 VGGQDKIRPLWRHYFQNTQGLIFVVDSXDRERIGEAREELMRMLSEDELRDAVLLIFANK 509
GQ++ R L Y +++ I V D + E+ + + + D ++++ NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLVGNK 125
Query: 510 QDLPNANERSRDNG 551
DL + + +++ G
Sbjct: 126 TDLADKRQVTQEEG 139
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 44.0 bits (99), Expect = 5e-05
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Frame = +3
Query: 183 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 347
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 348 IRPLWRHYFQNTQGLIFVVDSXDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 518
R + Y++ G + V D + L + L E + V+++ NK DL
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = +3
Query: 297 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSXDRERIGEAREELMRMLSEDEL 476
+ K I +WD GQ+K R + R+Y++ G + V D +++ E L + +
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPS 117
Query: 477 RDAVLLIFANKQDLPNANERSRD 545
V+L +K DL N + S +
Sbjct: 118 TICVVLA-GSKSDLQNQRQVSTE 139
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +3
Query: 183 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDK 347
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 348 IRPLWRHYFQNTQGLIFVVDSXDR 419
+ L Y+ Q I + D R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR 94
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 37.1 bits (82), Expect = 0.006
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 264 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 404
I T G + ET + +DVGGQ R W H F+N L+F+V
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLV 265
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +3
Query: 168 GKKEMRILMVGLDAAGKTTILYKLKL 245
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV--DSXDRERIGEARE 443
T+G + + ++ ++DVGGQ R W + F+N +IF V + D++ A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 444 ELMRMLSEDELRDAVL 491
E R++ L D+++
Sbjct: 239 ERNRLVESISLFDSII 254
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 36.7 bits (81), Expect = 0.008
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Frame = +3
Query: 183 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQD 344
+++++G A GK++++ + + TIG F +T+ E ++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 345 KIRPLWRHYFQNTQGLIFVVDSXDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPN 524
+ + L Y++N I V D + +A+ ++ L V+ + NK DL
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGIVIALAGNKLDL-- 132
Query: 525 ANER 536
A ER
Sbjct: 133 AQER 136
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 36.7 bits (81), Expect = 0.008
Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Frame = +3
Query: 180 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQD 344
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 345 KIRPLWRHYFQNTQGLIFVVDSXDRERIGEARE 443
+ + + ++F+ D + + +E
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 36.7 bits (81), Expect = 0.008
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = +3
Query: 183 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKI 350
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 351 RPLWRHYFQNTQGLI--FVVDSXD 416
L + ++ F +DS D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPD 93
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 35.9 bits (79), Expect = 0.014
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Frame = +3
Query: 168 GKKE--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 326
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 327 DVGGQDKIRPLWRHYFQNTQGLIFVVD---SXDRERIGEAREELMRMLSEDELRDAVLLI 497
D GQ++ + L +++ + V D S E + R+E + S ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFIL 122
Query: 498 FANKQDL 518
NK D+
Sbjct: 123 LGNKVDV 129
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.5 bits (73), Expect = 0.075
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Frame = +3
Query: 183 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQD 344
++L++G +GK+++ + + +G ++ +E+ ++ F +WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQE 62
Query: 345 KIRPLW-----RHYFQNTQGLIFVVDSXDRE 422
+ H F+N Q LI+V D RE
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.075
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +3
Query: 183 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ--- 341
++++VG A GKT +L G +PT+ N V VE ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 342 DKIRPL 359
D++RPL
Sbjct: 68 DRLRPL 73
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 33.1 bits (72), Expect = 0.099
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Frame = +3
Query: 183 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDKI 350
+I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 351 RPLWRHYFQNTQGLI--FVVDSXDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPN 524
L + +T ++ F VDS R+ + + + +S + L++ A K DL
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDS--RDSLENVITKWLPEVSSN-CPGVKLVLVALKCDLRG 131
Query: 525 ANERSRDN 548
A+E D+
Sbjct: 132 ADEEQVDH 139
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 31.1 bits (67), Expect = 0.40
Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Frame = +3
Query: 180 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 344
++++++G GKT ++ + + TIG + T V+ K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 345 KIRPLWRHYFQNTQGLIFVV---DSXDRERIGEAREELMRMLSEDE 473
+ + L +++ + V +S + + R+E + S+DE
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.9 bits (59), Expect = 3.7
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Frame = +3
Query: 171 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 350
KK + ++G +GKT++ +L E TT+P+I N E V +K ++ V D+ G +
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV-WKYGAWLV-DLPGHPRA 91
Query: 351 RPLWRHYFQ---NTQGLIFVVDSXDRER 425
+ F N + ++FV++S +R
Sbjct: 92 KRWITTKFSGNYNVKAVVFVLNSATIDR 119
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 4.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 365 PPQWSDFVLTAYIPHSETNVFVFY 294
PP+ SDF++ ++ H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 165 FGKKEMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 329
F K+ RIL VG L + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -2
Query: 295 TVSTLNPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPIF 125
T T+ P V + ++S N +L VVL + + +IN+ L ++ FA +FPIF
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIF 244
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 51 IEFSECSFFLILKTFASEKYYS--QSIKMGNMFANLFKGLFGKKEMRIL 191
I F +C +S+K++S SIK F +F G+F KK L
Sbjct: 197 IRFRQCLIERSSADNSSDKFWSTLNSIKYFTAFPAIFLGIFAKKRFSFL 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,970,900
Number of Sequences: 5004
Number of extensions: 67684
Number of successful extensions: 190
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 816655688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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