Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A08_e441_02.seq
         (1466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   2.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   3.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   3.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   8.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 337 PPTSHTVKLMFLYSTVSTLNPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPK 164
           PPTS TV L+  Y   + +   + +VVTI+     +R  V    ++    + I  LP+
Sbjct: 290 PPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPR 347


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -1

Query: 374 EIMPPQWSDFVLTAYIPHSETNVFV----FYSLHIEPNSGNCCNNF 249
           ++ P   S+F +   +   E  + V       LH++P   NCC ++
Sbjct: 359 QVEPDNSSNFAMKPLVRQPEDTMSVDRMQHCELHMQPRKKNCCRSW 404


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -1

Query: 374 EIMPPQWSDFVLTAYIPHSETNVFV----FYSLHIEPNSGNCCNNF 249
           ++ P   S+F +   +   E  + V       LH++P   NCC ++
Sbjct: 359 QVEPDNSSNFAMKPLVRQPEDTMSVDRMQHCELHMQPRKKNCCRSW 404


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 206 CCW*NYNSIQTQIR 247
           CCW  +N  Q QIR
Sbjct: 605 CCWHCFNCTQYQIR 618


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,780
Number of Sequences: 438
Number of extensions: 4954
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 51079875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)