Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A07_e433_01.seq
         (1572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   250   2e-66
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   248   7e-66
02_01_0295 - 1973115-1973404,1974138-1974663                           31   1.9  
11_04_0329 - 16442298-16443734                                         29   7.6  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  250 bits (613), Expect = 2e-66
 Identities = 128/222 (57%), Positives = 155/222 (69%), Gaps = 4/222 (1%)
 Frame = +1

Query: 94  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 273
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 274 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 447
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 448 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYK 621
            ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV   +R    K GK+ +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----K 176

Query: 622 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLA 747
           APKIQRLVTP+ LQ                 S  A+Y KLLA
Sbjct: 177 APKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLA 218


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  248 bits (608), Expect = 7e-66
 Identities = 127/222 (57%), Positives = 154/222 (69%), Gaps = 4/222 (1%)
 Frame = +1

Query: 94  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 273
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 274 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 447
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 448 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYK 621
            ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV   +R    K GK+ +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----K 176

Query: 622 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLA 747
           APKIQRLVTP+ LQ                 S  A+Y KLLA
Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLA 218


>02_01_0295 - 1973115-1973404,1974138-1974663
          Length = 271

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = +1

Query: 331 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKR 504
           G S  +  + G ++    RG +   + S  AL  +  GA   PG      ++P R+G  +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224

Query: 505 ASKIRKLFNLKKEDDVRRYVVKRLLPAKEG 594
            +KIRKL  +K ++D++  ++K  +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -2

Query: 518 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 348
           R+L A       G    +   + CAP   M       LAS+  P + LRF S  RRG
Sbjct: 56  RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,946,297
Number of Sequences: 37544
Number of extensions: 549426
Number of successful extensions: 1108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5081723304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)