Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_A07_e433_01.seq
(1572 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L07881-1|AAA28871.1| 248|Drosophila melanogaster ribosomal prot... 337 2e-92
L02075-1|AAB05985.1| 248|Drosophila melanogaster ribosomal prot... 337 2e-92
L02074-4|AAB05982.1| 248|Drosophila melanogaster ribosomal prot... 337 2e-92
L01658-1|AAC34306.1| 248|Drosophila melanogaster ribosomal prot... 337 2e-92
AE014298-1078|AAN09218.1| 248|Drosophila melanogaster CG10944-P... 337 2e-92
AE014298-1079|AAN09219.1| 251|Drosophila melanogaster CG10944-P... 333 3e-91
AY058620-1|AAL13849.1| 217|Drosophila melanogaster LD31286p pro... 272 1e-72
AE014298-1080|AAF46288.1| 217|Drosophila melanogaster CG10944-P... 272 1e-72
L02074-3|AAB05984.1| 200|Drosophila melanogaster protein ( Dros... 197 4e-50
L02074-2|AAB05983.1| 200|Drosophila melanogaster protein ( Dros... 197 4e-50
AE014298-1077|AAS65274.1| 135|Drosophila melanogaster CG33222-P... 62 2e-09
AE014298-1076|AAF46287.3| 135|Drosophila melanogaster CG11386-P... 62 2e-09
BT022735-1|AAY55151.1| 149|Drosophila melanogaster IP07614p pro... 60 8e-09
BT022511-1|AAY54927.1| 147|Drosophila melanogaster IP07914p pro... 60 8e-09
AE014298-854|AAF46133.1| 1399|Drosophila melanogaster CG14446-PA... 30 7.6
>L07881-1|AAA28871.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 337 bits (829), Expect = 2e-92
Identities = 162/217 (74%), Positives = 180/217 (82%)
Frame = +1
Query: 94 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 273
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 274 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 453
FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120
Query: 454 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI 633
IPGLTD +PRRLGPKRASKIRKL+NL KEDDVRR+VV+R LPA K+N K KAPKI
Sbjct: 121 IPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKI 177
Query: 634 QRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLL 744
QRL+TPVVLQ A ADYAKLL
Sbjct: 178 QRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLL 214
>L02075-1|AAB05985.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 337 bits (829), Expect = 2e-92
Identities = 162/217 (74%), Positives = 180/217 (82%)
Frame = +1
Query: 94 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 273
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 274 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 453
FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120
Query: 454 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI 633
IPGLTD +PRRLGPKRASKIRKL+NL KEDDVRR+VV+R LPA K+N K KAPKI
Sbjct: 121 IPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKI 177
Query: 634 QRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLL 744
QRL+TPVVLQ A ADYAKLL
Sbjct: 178 QRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLL 214
>L02074-4|AAB05982.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 337 bits (829), Expect = 2e-92
Identities = 162/217 (74%), Positives = 180/217 (82%)
Frame = +1
Query: 94 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 273
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 274 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 453
FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120
Query: 454 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI 633
IPGLTD +PRRLGPKRASKIRKL+NL KEDDVRR+VV+R LPA K+N K KAPKI
Sbjct: 121 IPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKI 177
Query: 634 QRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLL 744
QRL+TPVVLQ A ADYAKLL
Sbjct: 178 QRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLL 214
>L01658-1|AAC34306.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 337 bits (829), Expect = 2e-92
Identities = 162/217 (74%), Positives = 180/217 (82%)
Frame = +1
Query: 94 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 273
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 274 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 453
FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120
Query: 454 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI 633
IPGLTD +PRRLGPKRASKIRKL+NL KEDDVRR+VV+R LPA K+N K KAPKI
Sbjct: 121 IPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKI 177
Query: 634 QRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLL 744
QRL+TPVVLQ A ADYAKLL
Sbjct: 178 QRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLL 214
>AE014298-1078|AAN09218.1| 248|Drosophila melanogaster CG10944-PB,
isoform B protein.
Length = 248
Score = 337 bits (829), Expect = 2e-92
Identities = 162/217 (74%), Positives = 180/217 (82%)
Frame = +1
Query: 94 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 273
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 274 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 453
FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120
Query: 454 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI 633
IPGLTD +PRRLGPKRASKIRKL+NL KEDDVRR+VV+R LPA K+N K KAPKI
Sbjct: 121 IPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKI 177
Query: 634 QRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLL 744
QRL+TPVVLQ A ADYAKLL
Sbjct: 178 QRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLL 214
>AE014298-1079|AAN09219.1| 251|Drosophila melanogaster CG10944-PC,
isoform C protein.
Length = 251
Score = 333 bits (819), Expect = 3e-91
Identities = 160/215 (74%), Positives = 178/215 (82%)
Frame = +1
Query: 100 LNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFP 279
LNVSYPATGCQKLFEVVDEHKLR+FYEKRMG V+AD+LGDEWKGY LR+AGGNDKQGFP
Sbjct: 6 LNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFP 65
Query: 280 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIP 459
MKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++IP
Sbjct: 66 MKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIP 125
Query: 460 GLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQR 639
GLTD +PRRLGPKRASKIRKL+NL KEDDVRR+VV+R LPA K+N K KAPKIQR
Sbjct: 126 GLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQR 182
Query: 640 LVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLL 744
L+TPVVLQ A ADYAKLL
Sbjct: 183 LITPVVLQRKHRRIALKKKRQIASKEASADYAKLL 217
>AY058620-1|AAL13849.1| 217|Drosophila melanogaster LD31286p
protein.
Length = 217
Score = 272 bits (666), Expect = 1e-72
Identities = 132/186 (70%), Positives = 149/186 (80%)
Frame = +1
Query: 187 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 366
MG V+AD+LGDEWKGY LR+AGGNDKQGFPMKQGVLT+ RVRLL+ KGHSCYRPRR GE
Sbjct: 1 MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGE 60
Query: 367 RKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKED 546
RKRKSVRGCIVDAN+SVLALV+++KG ++IPGLTD +PRRLGPKRASKIRKL+NL KED
Sbjct: 61 RKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKED 120
Query: 547 DVRRYVVKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEA 726
DVRR+VV+R LPA K+N K KAPKIQRL+TPVVLQ A A
Sbjct: 121 DVRRFVVRRPLPA---KDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASA 177
Query: 727 DYAKLL 744
DYAKLL
Sbjct: 178 DYAKLL 183
>AE014298-1080|AAF46288.1| 217|Drosophila melanogaster CG10944-PA,
isoform A protein.
Length = 217
Score = 272 bits (666), Expect = 1e-72
Identities = 132/186 (70%), Positives = 149/186 (80%)
Frame = +1
Query: 187 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 366
MG V+AD+LGDEWKGY LR+AGGNDKQGFPMKQGVLT+ RVRLL+ KGHSCYRPRR GE
Sbjct: 1 MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGE 60
Query: 367 RKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKED 546
RKRKSVRGCIVDAN+SVLALV+++KG ++IPGLTD +PRRLGPKRASKIRKL+NL KED
Sbjct: 61 RKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKED 120
Query: 547 DVRRYVVKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEA 726
DVRR+VV+R LPA K+N K KAPKIQRL+TPVVLQ A A
Sbjct: 121 DVRRFVVRRPLPA---KDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASA 177
Query: 727 DYAKLL 744
DYAKLL
Sbjct: 178 DYAKLL 183
>L02074-3|AAB05984.1| 200|Drosophila melanogaster protein (
Drosophila melanogasterribosomal protein S6 gene and two
potential alternativelyspliced proteins, complete cds.
).
Length = 200
Score = 197 bits (480), Expect = 4e-50
Identities = 104/179 (58%), Positives = 126/179 (70%)
Frame = +1
Query: 94 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 273
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 274 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 453
FPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 61 FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS- 118
Query: 454 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPK 630
P RLGP R+S I K++ L +EDD ++P K + + K R A K
Sbjct: 119 ---------PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
>L02074-2|AAB05983.1| 200|Drosophila melanogaster protein (
Drosophila melanogasterribosomal protein S6 gene and two
potential alternativelyspliced proteins, complete cds.
).
Length = 200
Score = 197 bits (480), Expect = 4e-50
Identities = 104/179 (58%), Positives = 126/179 (70%)
Frame = +1
Query: 94 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 273
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 274 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 453
FPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 61 FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS- 118
Query: 454 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPK 630
P RLGP R+S I K++ L +EDD ++P K + + K R A K
Sbjct: 119 ---------PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
>AE014298-1077|AAS65274.1| 135|Drosophila melanogaster CG33222-PA
protein.
Length = 135
Score = 62.1 bits (144), Expect = 2e-09
Identities = 43/110 (39%), Positives = 60/110 (54%)
Frame = +1
Query: 301 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEV 480
N R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 5 NRRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS---------- 53
Query: 481 PRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPK 630
P RLGP R+S I K++ L +EDD ++P K + + K R A K
Sbjct: 54 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 96
>AE014298-1076|AAF46287.3| 135|Drosophila melanogaster CG11386-PA
protein.
Length = 135
Score = 62.1 bits (144), Expect = 2e-09
Identities = 43/110 (39%), Positives = 60/110 (54%)
Frame = +1
Query: 301 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEV 480
N R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 5 NRRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS---------- 53
Query: 481 PRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPK 630
P RLGP R+S I K++ L +EDD ++P K + + K R A K
Sbjct: 54 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 96
>BT022735-1|AAY55151.1| 149|Drosophila melanogaster IP07614p
protein.
Length = 149
Score = 60.1 bits (139), Expect = 8e-09
Identities = 42/108 (38%), Positives = 59/108 (54%)
Frame = +1
Query: 307 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPR 486
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 21 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 69
Query: 487 RLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPK 630
RLGP R+S I K++ L +EDD ++P K + + K R A K
Sbjct: 70 RLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 110
>BT022511-1|AAY54927.1| 147|Drosophila melanogaster IP07914p
protein.
Length = 147
Score = 60.1 bits (139), Expect = 8e-09
Identities = 42/108 (38%), Positives = 59/108 (54%)
Frame = +1
Query: 307 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPR 486
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 67
Query: 487 RLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPK 630
RLGP R+S I K++ L +EDD ++P K + + K R A K
Sbjct: 68 RLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
>AE014298-854|AAF46133.1| 1399|Drosophila melanogaster CG14446-PA
protein.
Length = 1399
Score = 30.3 bits (65), Expect = 7.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 271 PACRYRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQ 140
PA +QH +H L+ R ++ + P HR GA A P+Q
Sbjct: 1035 PASNLNKQHADHYLANERKDNALDYKPPVPPHRNVGARACLPVQ 1078
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,221,994
Number of Sequences: 53049
Number of extensions: 861846
Number of successful extensions: 1918
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of database: 24,988,368
effective HSP length: 88
effective length of database: 20,320,056
effective search space used: 8839224360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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