Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A06_e425_02.seq
         (1596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...   167   3e-42
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    28   3.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    28   3.1  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    27   5.5  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   5.5  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    27   7.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   7.2  

>SPAC15E1.06 |vps29||retromer complex subunit
           Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  167 bits (407), Expect = 3e-42
 Identities = 81/185 (43%), Positives = 117/185 (63%), Gaps = 4/185 (2%)
 Frame = +1

Query: 238 MLVLVLGDLHIPHRCSSXXXXXXXXXXXGRIQHILCTGNLCTKESYEYLKTLASDVHVVR 417
           MLVLV+GD HIP R              G+I  I+C GNL +   YEYLK + SD+ +V+
Sbjct: 1   MLVLVIGDFHIPDRAPKLSEKFRQLLIPGKISQIICLGNLTSTSVYEYLKHVCSDLKLVK 60

Query: 418 GDFDENTTYPEQKVITVGQFRIGLIHGHQVVPWGDEESLALVQRQLDVDILISGHTHRFE 597
           G FD ++  P    IT+G F+IG  +GH VVP    E+L+++ R++D DIL+ G TH+F 
Sbjct: 61  GAFDISSKAPIAGKITLGSFKIGYTNGHLVVPQDSPEALSILAREMDADILLFGGTHKFA 120

Query: 598 AYEHENKFYINPGSATGAYSPLY----RSPTPSFVLMDIQSSTVVTYVYKLLGDEVKVER 765
           AYE +  F++NPGSATGA +           PSFVLMD+Q + ++ YVY++   EV+VE+
Sbjct: 121 AYELDGCFFVNPGSATGAPNVSAVEDDEKIVPSFVLMDVQGAVLILYVYRIFDGEVRVEK 180

Query: 766 IEYKK 780
           ++Y+K
Sbjct: 181 MQYRK 185


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +2

Query: 1355 IXPXAPXTPKPMAXXXXRXXXPXXLRPPPXP 1447
            + P  P TPKP      R        PPP P
Sbjct: 1595 VKPTLPETPKPAIATHSRYNASFSSSPPPQP 1625


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +2

Query: 1355 IXPXAPXTPKPMAXXXXRXXXPXXLRPPPXP 1447
            + P  P TPKP      R        PPP P
Sbjct: 1595 VKPTLPETPKPAIATHSRYNASFSSSPPPQP 1625


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 589 RFEAYEHENKFYINPGSATGAYSPLYRSPTPSF 687
           +FEA+E+E  F  + G+ +  + P +  PT SF
Sbjct: 22  QFEAFENEFYFKDHLGTISVYHEPYFNGPTTSF 54


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 475 FRIGLIHGHQVVPWGDEESLALVQRQLDVDILISGHTH 588
           F IG   GH ++  G   SL L ++Q   + LIS + H
Sbjct: 250 FVIGAYSGHHLLGQGQASSLNLAEQQAAYNSLISYYIH 287


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 565 YQHRAASAPVP-GTPRHPRAQPDDHE*GQYETAQLLSPFAQG 443
           Y+   A   VP G P HP  +    + G+Y    L +P A G
Sbjct: 296 YRMSIAEMVVPYGNPEHPHQRKHAFDLGEYGAGYLTNPLALG 337


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/52 (30%), Positives = 18/52 (34%)
 Frame = +2

Query: 1316 PXDXPXXLGRPXPIXPXAPXTPKPMAXXXXRXXXPXXLRPPPXPSGRAXEXP 1471
            P   P     P P+   AP  PKP +        P    P P PS  A   P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKP-SVAAPPVPAPSGAPPVPKPSVAAPPVP 1172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,795,245
Number of Sequences: 5004
Number of extensions: 87258
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 901889170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)