Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A06_e425_02.seq
         (1596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0364 - 9457747-9458043,9459815-9459952,9460072-9460141,946...   202   3e-62
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405...    30   5.9  

>02_02_0364 -
           9457747-9458043,9459815-9459952,9460072-9460141,
           9460928-9460995,9462451-9462582
          Length = 234

 Score =  202 bits (494), Expect(2) = 3e-62
 Identities = 90/151 (59%), Positives = 117/151 (77%), Gaps = 4/151 (2%)
 Frame = +1

Query: 340 LCTGNLC----TKESYEYLKTLASDVHVVRGDFDENTTYPEQKVITVGQFRIGLIHGHQV 507
           LC G  C    TKE ++YLK+L  D+H+ RG++DE+  YPE K +T+GQF++GL HGHQV
Sbjct: 78  LCIGLTCYQDDTKEVHDYLKSLCPDLHITRGEYDEDARYPETKTLTIGQFKLGLCHGHQV 137

Query: 508 VPWGDEESLALVQRQLDVDILISGHTHRFEAYEHENKFYINPGSATGAYSPLYRSPTPSF 687
           VPWGD +SLA++QRQLDVDIL++GHTH+F+AY+HE    INPGSATGAYS +     PSF
Sbjct: 138 VPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSITYDVNPSF 197

Query: 688 VLMDIQSSTVVTYVYKLLGDEVKVERIEYKK 780
           VLMDI    VV YVY+L+  EVKV++I++KK
Sbjct: 198 VLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 228



 Score = 55.6 bits (128), Expect(2) = 3e-62
 Identities = 23/43 (53%), Positives = 28/43 (65%)
 Frame = +1

Query: 238 MLVLVLGDLHIPHRCSSXXXXXXXXXXXGRIQHILCTGNLCTK 366
           +LVL LGDLH+PHR +            G+IQHI+CTGNLC K
Sbjct: 2   VLVLALGDLHVPHRAADLPAKFKSMLVPGKIQHIICTGNLCIK 44


>06_03_0649 + 23138442-23138842,23139576-23139849,23139929-23140562,
            23140771-23140826,23141178-23141282,23141295-23141535,
            23142686-23142690
          Length = 571

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 18/61 (29%), Positives = 20/61 (32%)
 Frame = +2

Query: 1268 PXPLKRXSRKXTXXGGPXDXPXXLGRPXPIXPXAPXTPKPMAXXXXRXXXPXXLRPPPXP 1447
            P P     R+ T  GG       LG   P     P TP P A        P  + P P  
Sbjct: 15   PSPAAETRRRATGKGGKQRGGKQLGLKRPPPISVPATPPP-AATSSSPAAPTAIPPRPPQ 73

Query: 1448 S 1450
            S
Sbjct: 74   S 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,479,990
Number of Sequences: 37544
Number of extensions: 618287
Number of successful extensions: 1514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5174540168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)