Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_A06_e425_02.seq
(1596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.12
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.36
SB_3496| Best HMM Match : Herpes_UL49_5 (HMM E-Value=7.2) 32 1.5
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_40668| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.6
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 29 7.8
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37) 29 7.8
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4) 29 7.8
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 29 7.8
SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019) 29 7.8
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5) 29 7.8
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 29 7.8
>SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 35.5 bits (78), Expect = 0.12
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = -2
Query: 242 NILECNINNSCL*STNSLHAKNNITPTGVYRIYRFYRNCKYINKNI-----SLNHNNHIV 78
NI N NN+ + + N+ ++KNNI Y+ + Y+N IN I S+N+NN+I+
Sbjct: 29 NITNNNNNNNIIINNNNDNSKNNIKKHKAYQKHGHYQNNININSEIKDTKDSINNNNNII 88
>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 33.9 bits (74), Expect = 0.36
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = -1
Query: 1044 VGXARGFSQSRXV*XAGPVNCNXTXYRAKW 955
+G A+GF S V PVNCN T YRA W
Sbjct: 31 LGNAKGFP-SHDVVKRRPVNCNTTHYRANW 59
>SB_3496| Best HMM Match : Herpes_UL49_5 (HMM E-Value=7.2)
Length = 98
Score = 31.9 bits (69), Expect = 1.5
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 973 SXITIHWPGXLXRPXLGKXPGVSHLMPCGHLPFXDCG-XXXRP-PXALPXXL 1122
S ITIHWP GK + +L+ H+P G RP P ALP L
Sbjct: 2 SRITIHWP-SFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPKQL 52
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 31.5 bits (68), Expect = 1.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1
Query: 1044 VGXARGFSQSRXV*XAGPVNCNXTXYRAKW 955
+G +GF S V PVNCN T YRA W
Sbjct: 74 LGKRQGFP-SHDVVKRRPVNCNTTHYRANW 102
>SB_40668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 31.1 bits (67), Expect = 2.6
Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 939 GGARXPISPYXESXYNSLARXFXPXXTGKXPWRXPLNALRX-SPFXXLRXXXKA 1097
GGA PI PY ES Y+SLA K P PLN L PF R +A
Sbjct: 51 GGA--PIRPYSESYYSSLAVGL-QRLDWKNPGVTPLNRLEAHPPFASWRNSEEA 101
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 12 PVNCNTTHYRANW 24
>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 68 PVNCNTTHYRANW 80
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 636 PVNCNTTHYRANW 648
>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
Length = 257
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 9 PVNCNTTHYRANW 21
>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
Length = 117
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 49 PVNCNTTHYRANW 61
>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 1887 PVNCNTTHYRANW 1899
>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 47 PVNCNTTHYRANW 59
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 9 PVNCNTTHYRANW 21
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 41 PVNCNTTHYRANW 53
>SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
Length = 1234
Score = 29.5 bits (63), Expect = 7.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 499 HQVVPWGDEESLALVQRQLDVDILISGHTHRFEAYEHENKFYINPGSATGAYSPL 663
H + WGD + R+ +DIL HTH+ + + Y N TG YSP+
Sbjct: 1017 HGTIMWGDRVVVLPKLRRRVLDILHESHTHKLDRFLFA---YRNAPHPTG-YSPV 1067
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 68 PVNCNTTHYRANW 80
>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
Length = 281
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 79 PVNCNTTHYRANW 91
>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 55 PVNCNTTHYRANW 67
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 993 PVNCNXTXYRAKW 955
PVNCN T YRA W
Sbjct: 79 PVNCNTTHYRANW 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,909,130
Number of Sequences: 59808
Number of extensions: 705843
Number of successful extensions: 3095
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3083
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5235048542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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