Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_A05_e417_01.seq
(1535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 210 4e-55
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 210 4e-55
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 30 0.74
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 29 1.7
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 28 3.9
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 27 9.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 9.1
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 9.1
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 210 bits (513), Expect = 4e-55
Identities = 98/131 (74%), Positives = 113/131 (86%)
Frame = +2
Query: 116 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 295
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 296 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 475
EE+E+IVTI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 476 RGMRHYWGLRV 508
RG+RH LRV
Sbjct: 121 RGLRHALDLRV 131
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 210 bits (513), Expect = 4e-55
Identities = 98/131 (74%), Positives = 113/131 (86%)
Frame = +2
Query: 116 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 295
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 296 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 475
EE+E+IVTI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 476 RGMRHYWGLRV 508
RG+RH LRV
Sbjct: 121 RGLRHALDLRV 131
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 30.3 bits (65), Expect = 0.74
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 155 EEYAEICLGSQETFWQFEFTKTSNINPRAEXPAARGIH 42
+ Y E CL + +FE +T N+NP +E R H
Sbjct: 1169 DNYLEECLKIRSVLAEFEEMETDNVNPYSESARERNKH 1206
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 443 DLERLKKIRAHRGMRHYWGLRV 508
D+ RL IR +RGMRH GL V
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPV 97
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 452 FPNLHEAWSLNWKKSTGCICHQQYPFV 372
F NL+ + L W++ C C QYPF+
Sbjct: 368 FINLYHDFEL-WEQKINCFCFCQYPFL 393
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 330 QTPGNTKYQTGFSTDKRIL--LMANTAS*LLPI*TPSFVKIW 449
Q+PG+ + GF+ D+R L ++N+ + P P V+ W
Sbjct: 459 QSPGSLETTNGFTLDERNLAFTLSNSVGHMAPSKDPQMVREW 500
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +1
Query: 640 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 804
P P+ S ++ H + + +L N I+L ++PLSP A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231
Query: 805 SCA 813
S A
Sbjct: 232 SDA 234
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 747 PPFASWRNSEEARTDRPSQQLRSLN 821
PP AS RN E + PS+Q S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,645,994
Number of Sequences: 5004
Number of extensions: 82423
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 862245690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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