Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_A05_e417_01.seq
(1535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 206 4e-53
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 195 7e-50
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 194 2e-49
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 79 1e-14
08_01_0035 - 262750-262962,263046-263277,263420-263627,263762-26... 32 1.4
04_04_1697 - 35454337-35454576,35454657-35454888,35455045-354552... 31 1.8
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 31 2.4
03_01_0404 + 3138624-3140096 31 2.4
09_02_0036 + 3217163-3217584,3217752-3218322 30 4.2
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 30 5.6
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 30 5.6
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 206 bits (503), Expect = 4e-53
Identities = 86/125 (68%), Positives = 114/125 (91%)
Frame = +2
Query: 134 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 313
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 314 IVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 493
++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHY
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 494 WGLRV 508
WGLRV
Sbjct: 123 WGLRV 127
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 195 bits (476), Expect = 7e-50
Identities = 90/147 (61%), Positives = 118/147 (80%), Gaps = 16/147 (10%)
Frame = +2
Query: 116 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 280
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 281 -----------AGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 427
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 428 SKLREDLERLKKIRAHRGMRHYWGLRV 508
KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRV 147
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 194 bits (472), Expect = 2e-49
Identities = 90/149 (60%), Positives = 118/149 (79%), Gaps = 18/149 (12%)
Frame = +2
Query: 116 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 280
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 281 -------------AGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN 421
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 422 LDSKLREDLERLKKIRAHRGMRHYWGLRV 508
LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRV 149
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 78.6 bits (185), Expect = 1e-14
Identities = 35/51 (68%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Frame = +2
Query: 359 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 508
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 57
>08_01_0035 -
262750-262962,263046-263277,263420-263627,263762-264011,
265232-265342
Length = 337
Score = 31.9 bits (69), Expect = 1.4
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = -3
Query: 411 VNWLYL-PSTISFCLLRNQSGIL-YCLGFDMIVTIFSTSSSVHSPARLSRSISAFFNTML 238
+NWLY S + ++ SG+L +CL F + I ST++ + A + A + +
Sbjct: 218 INWLYTYDSIVPALIIITTSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWM 277
Query: 237 EYRRP-TPLIAVIANITL 187
+R P + + AV ITL
Sbjct: 278 IFRNPISAMNAVGCAITL 295
>04_04_1697 -
35454337-35454576,35454657-35454888,35455045-35455252,
35455380-35455629,35456232-35456354
Length = 350
Score = 31.5 bits (68), Expect = 1.8
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = -3
Query: 411 VNWLYLPSTISFCL-LRNQSGIL-YCLGFDMIVTIFSTSSSVHSPARLSRSISAFFNTML 238
V W Y +I+ L + SG+L +CL F + I ST++ + A + A + L
Sbjct: 222 VTWFYTHDSIASALVIIIGSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWL 281
Query: 237 EYRRP-TPLIAVIANITL 187
+R P +P+ A+ ITL
Sbjct: 282 IFRNPISPMNAIGCAITL 299
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 31.1 bits (67), Expect = 2.4
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 437 REDLERLKKIRAHRGMRHYWGLRV 508
R +ERLK+IR +RG+RH GL V
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPV 131
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 2.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 389 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 487
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 4.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 664 ITIHWPSFYNVV-TGKTLALPNLIALQH 744
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 29.9 bits (64), Expect = 5.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 726 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVXILLKFAL 869
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 29.9 bits (64), Expect = 5.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 726 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVXILLKFAL 869
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,740,581
Number of Sequences: 37544
Number of extensions: 636677
Number of successful extensions: 1720
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4942498008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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