Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A04_e409_02.seq
         (1475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   145   2e-35
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.71 
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   5.0  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    27   8.7  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  145 bits (351), Expect = 2e-35
 Identities = 72/127 (56%), Positives = 85/127 (66%)
 Frame = +3

Query: 453 TTKSGAPVGVKTAIQTVGKNGPALLQDVNFLDEISSFDRERIPERVVHAKGAGAFGYFEV 632
           TT +G P+    A   VGK GP LLQD + +D    FDRERIPERVVHAKG+GAFG FE 
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFEC 72

Query: 633 THDITKYSAARVFEKIGKKTPIAVRFSTVGGESGSADTVRDPRGVCXEVLH**WXIGDLV 812
           T DITKY+   +F K+GKKTP+  RFSTVGGE G+ DT RDPRG   +  +    I D+V
Sbjct: 73  TDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALK-FYTDEGIFDMV 131

Query: 813 GNNPSXF 833
           GNN   F
Sbjct: 132 GNNTPVF 138


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 6/122 (4%)
 Frame = -2

Query: 811 TRSPIXHHQCRTSLQTPLGSRTVSADPLSPPTVENLTAIGVFLPIFSNTLAAEYFVIS*V 632
           T +P+    C TS      S  V++ PL+       T++    P  S  + +  + IS  
Sbjct: 523 TSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSV----PYTSTPVTSSNYTISSS 578

Query: 631 TSKYPKAPAPFACTTRSGIRSLS------NDEISSRKLTSWRRAGPFLPTVCMAVLTPTG 470
           T           CTT + +   S      N   SS    SW    P   T    V + T 
Sbjct: 579 TPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTS 638

Query: 469 AP 464
            P
Sbjct: 639 IP 640


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 743 VSRPTLTTYC*ESHCNWCFFTNFFKHSSC 657
           VSRP++TT   +  C  C FTNF + S+C
Sbjct: 552 VSRPSVTTDQGDWLCE-CGFTNFRRRSNC 579


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 709 NLTAIGVFLPIFSNTLAAEYFVI 641
           +L+A  VFL  F+  L A+YFVI
Sbjct: 408 SLSAYAVFLSSFAGILIADYFVI 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,570,719
Number of Sequences: 5004
Number of extensions: 84822
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 822602210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)