Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A04_e409_02.seq
         (1475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299...   126   4e-29
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176...   124   2e-28
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82...   119   7e-27
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254...    31   1.7  
07_03_0829 - 21792924-21793247,21793332-21793482,21793577-217938...    30   5.3  
02_04_0094 + 19664434-19665078                                         30   5.3  
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90...    29   7.1  
04_04_0499 + 25674024-25674233,25674515-25675072,25675320-256754...    29   7.1  
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595     29   9.3  

>06_03_1479 +
           30428488-30428502,30428619-30428715,30429627-30429904,
           30430256-30431032,30431254-30431343,30431538-30431605,
           30431696-30431789,30431902-30431961
          Length = 492

 Score =  126 bits (304), Expect = 4e-29
 Identities = 65/127 (51%), Positives = 83/127 (65%)
 Frame = +3

Query: 453 TTKSGAPVGVKTAIQTVGKNGPALLQDVNFLDEISSFDRERIPERVVHAKGAGAFGYFEV 632
           TT SGAPV    +  TVG+ GP LL+D + +++++ FDRERIPERVVHA+GA A G+FEV
Sbjct: 18  TTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFFEV 77

Query: 633 THDITKYSAARVFEKIGKKTPIAVRFSTVGGESGSADTVRDPRGVCXEVLH**WXIGDLV 812
           THDI+  + A      G +TP+ VRFSTV  E GS +T+RDPRG   +         DLV
Sbjct: 78  THDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNF-DLV 136

Query: 813 GNNPSXF 833
           GNN   F
Sbjct: 137 GNNMPVF 143


>03_01_0223 -
           1766292-1766442,1767621-1767676,1767798-1767891,
           1768004-1768071,1768441-1769585,1770072-1770168,
           1770265-1770279
          Length = 541

 Score =  124 bits (298), Expect = 2e-28
 Identities = 67/134 (50%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
 Frame = +3

Query: 453 TTKSGAPVGVKTAIQTVGKNGPALLQDVNFLDEISSFDRERIPERVVHAKGAGAFGYFEV 632
           +T SGAPV       TVG  GP LL+D + ++++++FDRERIPERVVHA+GA A G+FEV
Sbjct: 18  STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEV 77

Query: 633 THDITKYSAARVFEKIGKKTPIAVRFSTVGGESGSADTVRDPRGVCXEVLH**WXIGDLV 812
           THDIT  + A      G +TP+ VRFSTV  E GS +T+RDPRG   +  +      DLV
Sbjct: 78  THDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIK-FYTREGNWDLV 136

Query: 813 GNN-PSXFXYXGTR 851
           GNN P  F   G +
Sbjct: 137 GNNFPVFFIRDGMK 150


>02_01_0111 -
           825369-825428,825778-826380,826467-827267,827716-827766
          Length = 504

 Score =  119 bits (286), Expect = 7e-27
 Identities = 63/134 (47%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
 Frame = +3

Query: 453 TTKSGAPVGVKTAIQTVGKNGPALLQDVNFLDEISSFDRERIPERVVHAKGAGAFGYFEV 632
           TT +GAPV       TVG  GP LL+D + +++++ F RERIPERVVHA+GA A G+FE 
Sbjct: 30  TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFEC 89

Query: 633 THDITKYSAARVFEKIGKKTPIAVRFSTVGGESGSADTVRDPRGVCXEVLH**WXIGDLV 812
           THD+T  + A      G +TP+ VRFSTV  E GS +T+RDPRG   +  +      DL+
Sbjct: 90  THDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVK-FYTREGNWDLL 148

Query: 813 GNN-PSXFXYXGTR 851
           GNN P  F   G +
Sbjct: 149 GNNFPVFFIRDGIK 162


>06_03_0970 +
           26424209-26424910,26425053-26425109,26425251-26425478,
           26425788-26425881,26425955-26426161,26426581-26426711,
           26426943-26426992,26427125-26427432,26427548-26427651,
           26427810-26428526,26429159-26429338,26429703-26429831
          Length = 968

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 492 IQTVGKNGPALLQDVNFLDEISSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAARVF 671
           ++ +GK+  AL +D NF  + SS D  R+ E     KG     YF    +  + + AR+ 
Sbjct: 32  MEKLGKDQDAL-EDANFQQKPSSVDLNRLMELANSEKGVSQMQYFVKHWEYKRANTARLL 90

Query: 672 -EKIG 683
            E+IG
Sbjct: 91  KEQIG 95


>07_03_0829 -
           21792924-21793247,21793332-21793482,21793577-21793811,
           21793900-21794110,21794218-21794435,21794536-21794671,
           21796732-21797517
          Length = 686

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 544 RKLTSWRRAGPFLPTVCMAVLTPTGAPDFVVMYPGES 434
           R LT+WR AG   P      + P GAP+  + Y G S
Sbjct: 184 RYLTTWRSAGDPSPGDYTFKIDPRGAPEGFIWYNGTS 220


>02_04_0094 + 19664434-19665078
          Length = 214

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 464 WCSCWCQDSHTNCRQEWSCPPPR 532
           WC+ W   +   CR+ WS PPPR
Sbjct: 193 WCAPWLVSAA--CRRCWSAPPPR 213


>12_01_0119 +
           905916-907277,907737-907774,908269-908492,909411-909637,
           909733-909980,910275-910557,910707-911135
          Length = 936

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -1

Query: 692 CFFTNFFKHSSCRVFCYIMSYFKVSKSTSAFCMYNTLWYTFPVKR*NLIQKVDILEEGRT 513
           CF ++F K     +FC +    KV     +F   + LW   P K    IQ +D  E+ R 
Sbjct: 665 CFGSSFTKGEE--IFCKLRQLQKVIAQQDSFVGLSALWKYLPTKSNQEIQMLD--EQVRL 720

Query: 512 ILAD 501
           ++ D
Sbjct: 721 LILD 724


>04_04_0499 +
           25674024-25674233,25674515-25675072,25675320-25675415,
           25675509-25675601,25675882-25676125,25676239-25676276,
           25676377-25676478
          Length = 446

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 23/75 (30%), Positives = 32/75 (42%)
 Frame = -2

Query: 673 SNTLAAEYFVIS*VTSKYPKAPAPFACTTRSGIRSLSNDEISSRKLTSWRRAGPFLPTVC 494
           +N+L AE+ VIS  TS     P P   T R     + +  +SS  +       PF P+  
Sbjct: 35  TNSLLAEWVVISRDTSFSLADPTPLKPTVRLDWYFMLSAAVSSSAMIVATATIPFFPSFH 94

Query: 493 MAVLTPTGAPDFVVM 449
                P G P  VV+
Sbjct: 95  RPRFRPGGLPRRVVV 109


>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
          Length = 514

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +3

Query: 393 PASDQLVNFKKSLKDSPGYITT-KSGAPVGVKTAIQTVGKNGPALLQDVNFLDEISSFDR 569
           P     VNF     +SPG+ TT +       + A+  + + GP+       LDE   +  
Sbjct: 31  PRFKAAVNFNGEQFESPGFFTTLRQAEHAAAEVALAALARRGPSYSLAARILDETGVYKN 90

Query: 570 --ERIPERV 590
             + + +RV
Sbjct: 91  LLQEVAQRV 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,733,238
Number of Sequences: 37544
Number of extensions: 771394
Number of successful extensions: 1452
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4710455848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)