Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A04_e409_02.seq
         (1475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.77 
SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.77 
SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.3  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   31   2.3  
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)                     31   3.1  

>SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 32.7 bits (71), Expect = 0.77
 Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = -2

Query: 730 LSPPTVENLTAIGVFLPIFSNTLAA------EYFVIS*VTSKYPKAPAPFACTTRSGIRS 569
           LSP TV NLT   V  PI +N LA       +Y V     SK  +    F C T    + 
Sbjct: 154 LSPLTV-NLTGSCVSGPIRTNDLALITCPSEKYIVKQSALSKCFQNDKAFLCPTNILHKI 212

Query: 568 LSNDEISSRKLTSWRRAGPFLPTVC 494
            S D +   KLT  + A  FLPT C
Sbjct: 213 GSFDWLGHTKLTKLKYARNFLPTSC 237


>SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 32.7 bits (71), Expect = 0.77
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 618 GYFEVTHDITKYSAARVFEKIGKKTPIAVRFSTVGGESGSADTVRDPRGVCXEVLH 785
           G +E +    + S A+      K T +  RF    G+S + D VR+  GVC + LH
Sbjct: 337 GGYEGSSPSMETSCAKKVWNNSKDTGLEYRFMVSDGDSKAFDEVRETYGVCEDCLH 392


>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 618 GYFEVTHDITKYSAARVFEKIGKKTPIAVRFSTVGGESGSADTVRDPRGVCXEVLH 785
           G +E +    + S A+      K T +  RF    G+S +   VRD  GVC + LH
Sbjct: 606 GGYEGSSPSMETSCAKKIWNNSKDTGLEYRFMVSDGDSKAFGEVRDTYGVCEDCLH 661


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 486 TAIQTVGKNGPALLQDVNFLDEISSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAR 665
           T + T  ++GP         + + S  R+R+ E    + G G + Y     +IT+YS ++
Sbjct: 177 TQVSTTRRSGPDGKTTTTTREVVDSGGRQRVTESTRTSPGIGRYDYTSARRNITEYSPSQ 236


>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
          Length = 1007

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 120 QHYICHHSNDLIKCLVPNXLQPGGXP 43
           + YI HH N ++  ++P    PGG P
Sbjct: 489 ERYISHHGNPIMPSVIPARQSPGGTP 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,571,714
Number of Sequences: 59808
Number of extensions: 751104
Number of successful extensions: 1444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4765537462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)