Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A04_e409_02.seq
         (1475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   6.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 154 VDRCVHDTRCRVSVTGCV*LKTCLSNGN 237
           +D    D  C  +  G V L+TC  N N
Sbjct: 197 IDWQPEDEECTEATAGAVVLETCQRNSN 224



 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 380 HFDSGDCSLNKSCMKSRSR*HGATLWTR 297
           H DSG+ +      +S S  HG+  WT+
Sbjct: 386 HSDSGENNSRGHSGQSSSHHHGSKSWTQ 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,403
Number of Sequences: 438
Number of extensions: 7221
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 51438750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)