Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_A04_e409_02.seq
         (1475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20630.1 68414.m02581 catalase 1 identical to catalase 1 GI:2...   132   4e-31
At4g35090.1 68417.m04984 catalase 2 identical to catalase 2 SP:P...   127   2e-29
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c...   116   4e-26
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c...   116   4e-26
At3g59480.1 68416.m06636 pfkB-type carbohydrate kinase family pr...    30   3.4  
At5g66350.1 68418.m08365 zinc finger protein, putative (SHI) sim...    29   5.9  
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi...    29   7.8  
At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family pr...    29   7.8  

>At1g20630.1 68414.m02581 catalase 1 identical to catalase 1
           GI:2511725 from [Arabidopsis thaliana]
          Length = 492

 Score =  132 bits (320), Expect = 4e-31
 Identities = 73/143 (51%), Positives = 93/143 (65%), Gaps = 1/143 (0%)
 Frame = +3

Query: 426 SLKDSPGYITTKSGAPVGVKTAIQTVGKNGPALLQDVNFLDEISSFDRERIPERVVHAKG 605
           S  DSP + TT SGAPV    +  TVG  GP LL+D + L+++++FDRERIPERVVHA+G
Sbjct: 10  SAHDSP-FFTTNSGAPVWNNNSSLTVGTRGPILLEDYHLLEKLANFDRERIPERVVHARG 68

Query: 606 AGAFGYFEVTHDITKYSAARVFEKIGKKTPIAVRFSTVGGESGSADTVRDPRGVCXEVLH 785
           A A G+FEVTHDIT+ ++A      G +TP+ VRFSTV  E GS +T+RDPRG   +   
Sbjct: 69  ASAKGFFEVTHDITQLTSADFLRGPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYT 128

Query: 786 **WXIGDLVGNN-PSXFXYXGTR 851
                 DLVGNN P  F   G +
Sbjct: 129 REGNF-DLVGNNFPVFFVRDGMK 150


>At4g35090.1 68417.m04984 catalase 2 identical to catalase 2
           SP:P25819, GI:17865693 from [Arabidopsis thaliana]
          Length = 492

 Score =  127 bits (307), Expect = 2e-29
 Identities = 69/140 (49%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
 Frame = +3

Query: 435 DSPGYITTKSGAPVGVKTAIQTVGKNGPALLQDVNFLDEISSFDRERIPERVVHAKGAGA 614
           +SP + TT SGAPV    +  TVG  GP LL+D + ++++++FDRERIPERVVHA+GA A
Sbjct: 13  NSP-FFTTNSGAPVWNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASA 71

Query: 615 FGYFEVTHDITKYSAARVFEKIGKKTPIAVRFSTVGGESGSADTVRDPRGVCXEVLH**W 794
            G+FEVTHDI+  + A      G +TP+ VRFSTV  E GS +T+RDPRG   +      
Sbjct: 72  KGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREG 131

Query: 795 XIGDLVGNN-PSXFXYXGTR 851
              DLVGNN P  F   G +
Sbjct: 132 NF-DLVGNNFPVFFIRDGMK 150


>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 427

 Score =  116 bits (279), Expect = 4e-26
 Identities = 62/136 (45%), Positives = 84/136 (61%)
 Frame = +3

Query: 426 SLKDSPGYITTKSGAPVGVKTAIQTVGKNGPALLQDVNFLDEISSFDRERIPERVVHAKG 605
           S  ++P Y TT  GAPV    +  T+G+ GP LL+D + ++++++F RERIPERVVHA+G
Sbjct: 10  SAYNAPFY-TTNGGAPVSNNISSLTIGERGPVLLEDYHLIEKVANFTRERIPERVVHARG 68

Query: 606 AGAFGYFEVTHDITKYSAARVFEKIGKKTPIAVRFSTVGGESGSADTVRDPRGVCXEVLH 785
             A G+FEVTHDI+  + A      G +TP+ VRFSTV  E  S +T+RD RG   +   
Sbjct: 69  ISAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVVHERASPETMRDIRGFAVKFYT 128

Query: 786 **WXIGDLVGNNPSXF 833
                 DLVGNN   F
Sbjct: 129 REGNF-DLVGNNTPVF 143


>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 492

 Score =  116 bits (279), Expect = 4e-26
 Identities = 62/136 (45%), Positives = 84/136 (61%)
 Frame = +3

Query: 426 SLKDSPGYITTKSGAPVGVKTAIQTVGKNGPALLQDVNFLDEISSFDRERIPERVVHAKG 605
           S  ++P Y TT  GAPV    +  T+G+ GP LL+D + ++++++F RERIPERVVHA+G
Sbjct: 10  SAYNAPFY-TTNGGAPVSNNISSLTIGERGPVLLEDYHLIEKVANFTRERIPERVVHARG 68

Query: 606 AGAFGYFEVTHDITKYSAARVFEKIGKKTPIAVRFSTVGGESGSADTVRDPRGVCXEVLH 785
             A G+FEVTHDI+  + A      G +TP+ VRFSTV  E  S +T+RD RG   +   
Sbjct: 69  ISAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVVHERASPETMRDIRGFAVKFYT 128

Query: 786 **WXIGDLVGNNPSXF 833
                 DLVGNN   F
Sbjct: 129 REGNF-DLVGNNTPVF 143


>At3g59480.1 68416.m06636 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 326

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 426 SLKDSPGYITTKSGAPVGVKTAIQTVG 506
           SL D+PG+I    GAP  V  AI  +G
Sbjct: 29  SLADAPGFIKAPGGAPANVAIAISRLG 55


>At5g66350.1 68418.m08365 zinc finger protein, putative (SHI)
           similar to lateral root primordium 1 (LRP1) [Arabidopsis
           thaliana] GI:882341; contains Pfam profile PF05142:
           Domain of unknown function (DUF702); identical to cDNA
           putative zinc finger protein SHI (SHI)  GI:4929802
          Length = 331

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -1

Query: 308 LWTRTVHTNTGGAERGPSF---IELPMLPFDKQVLSQTQ 201
           LW R  ++N  G E GPS+   +EL   P +++++ Q Q
Sbjct: 35  LWCRNPNSNADGGEAGPSYKGTLELWQHPNNQEIIFQQQ 73


>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 1141

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 642  YHELL-QSIQKHQRLLHVQHALVYVPCQTMKSHPES*H 532
            +H+ + QS Q HQ +   QHA  + P Q  +  PE  H
Sbjct: 1056 FHQSIHQSHQHHQSIYQSQHAATHYPSQNHQCDPELSH 1093


>At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family
           protein similar to fructokinase GI:2102693 from
           [Lycopersicon esculentum]
          Length = 345

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 426 SLKDSPGYITTKSGAPVGVKTAIQTVG 506
           SL +SPG++    GAP  V  A+  +G
Sbjct: 29  SLSESPGFLKAPGGAPANVAIAVSRLG 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,159,197
Number of Sequences: 28952
Number of extensions: 536070
Number of successful extensions: 1009
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3922906944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)