Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H11_e664_15.seq
         (1606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413...    29   7.8  

>09_02_0088 +
           4136698-4136857,4137530-4137558,4137992-4138954,
           4138973-4139301,4139398-4139485,4139766-4139864,
           4139935-4140245,4140532-4140685
          Length = 710

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 98  LLLPFLCFYNVYVQTNYXRLSVFILK*EIVSKIQLHIDQHSIQNDQS*KYTD 253
           L  P +CFY V  Q  +  L  F L+  I       +D H + N ++ K TD
Sbjct: 454 LRCPLICFYAVEWQLIHRVLRQFGLRQPIPKPFPTGLDLHKLDNKKNKKITD 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,199,185
Number of Sequences: 37544
Number of extensions: 412625
Number of successful extensions: 714
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5209346492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)