Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H10_e656_16.seq
         (1526 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   2.6  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    24   3.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   6.0  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 692 FLFVCGTFTKTSYNITVFS 748
           F F+C +FTK  +N TVF+
Sbjct: 441 FPFICNSFTKFEFN-TVFN 458


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 500 LTTGHNFYMLIHPFELGIYIVFYN 571
           + T  NF +LI      IYI+F++
Sbjct: 160 MCTSMNFVLLIGDLHTSIYIIFFD 183


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 933  CVSXGLVG*STXXKWKNVFGLQFLERXKKKKTXXG 1037
            CV+   VG +      NV+GL F+   +K+    G
Sbjct: 491  CVASSKVGSADHSARINVYGLPFVRSMEKQAIVAG 525


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,065
Number of Sequences: 336
Number of extensions: 5469
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45886400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)