Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H10_e656_16.seq
         (1526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...   157   4e-39
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...   119   1e-27
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...   113   5e-26
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    33   0.10 
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    28   3.9  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    27   9.0  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score =  157 bits (381), Expect = 4e-39
 Identities = 75/94 (79%), Positives = 87/94 (92%)
 Frame = +2

Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
           LQFPVGR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KDLKVKRITPR
Sbjct: 64  LQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPR 123

Query: 332 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 433
           HLQLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 124 HLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score =  119 bits (286), Expect = 1e-27
 Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
 Frame = +2

Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI PR
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPR 83

Query: 332 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 460
           HLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+ G G P
Sbjct: 84  HLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score =  113 bits (273), Expect = 5e-26
 Identities = 60/100 (60%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
 Frame = +2

Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI PR
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPR 83

Query: 332 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 448
           HLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 84  HLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = +2

Query: 155 QFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 334
           +FPV RI + +       G+V     V  +  LE     +++ +   ++  + KR+T  H
Sbjct: 23  RFPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSH 81

Query: 335 LQLAIRGDEELDSL 376
           L+ A++  E+ D L
Sbjct: 82  LKHAVQSVEQFDFL 95


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 563 KLCIYPIRRDELTCRSYVRLSNAILFFVTLPSFRQVLLDHLS 438
           +LC YP+    LT ++Y  L++ IL F       ++L  H S
Sbjct: 59  RLCGYPVMGQYLTAKAYYGLASTILDFRFKIENEEILRKHKS 100


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +1

Query: 385 HHCWWRCYSTYT--*ISHW 435
           HHC WR  ST+    +SHW
Sbjct: 295 HHCRWRTLSTFAREQLSHW 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,552,779
Number of Sequences: 5004
Number of extensions: 82803
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 856299168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)