Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_H10_e656_16.seq
(1526 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g52740.1 68414.m05962 histone H2A, putative similar to histon... 179 5e-45
At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800 178 9e-45
At2g38810.3 68415.m04767 histone H2A, putative strong similarity... 177 1e-44
At2g38810.2 68415.m04766 histone H2A, putative strong similarity... 177 1e-44
At2g38810.1 68415.m04765 histone H2A, putative strong similarity... 177 1e-44
At4g13570.1 68417.m02114 histone H2A, putative similar to histon... 138 7e-33
At3g20670.1 68416.m02616 histone H2A, putative strong similarity... 122 6e-28
At5g54640.1 68418.m06803 histone H2A identical to histone H2A Ar... 120 3e-27
At4g27230.1 68417.m03910 histone H2A, putative strong similarity... 120 3e-27
At1g51060.1 68414.m05740 histone H2A, putative similar to histon... 120 3e-27
At1g08880.1 68414.m00988 histone H2A, putative Strong similarity... 117 2e-26
At1g54690.1 68414.m06235 histone H2A, putative strong similarity... 116 5e-26
At5g02560.1 68418.m00190 histone H2A, putative similar to histon... 112 5e-25
At5g59870.1 68418.m07507 histone H2A, putative similar to histon... 109 6e-24
At5g27670.1 68418.m03317 histone H2A, putative similar to histon... 107 1e-23
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 31 1.5
At4g27840.1 68417.m03998 expressed protein 30 4.6
>At1g52740.1 68414.m05962 histone H2A, putative similar to histone
H2A.F/Z Arabidopsis thaliana GI:2407800; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 134
Score = 179 bits (435), Expect = 5e-45
Identities = 86/96 (89%), Positives = 92/96 (95%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
LQFPVGR+HR LK R+T+HGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRI+PR
Sbjct: 35 LQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPR 94
Query: 332 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 439
HLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 95 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 130
>At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800
Length = 136
Score = 178 bits (433), Expect = 9e-45
Identities = 85/96 (88%), Positives = 91/96 (94%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 37 IQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPR 96
Query: 332 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 439
HLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 97 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 132
>At2g38810.3 68415.m04767 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 177 bits (432), Expect = 1e-44
Identities = 84/96 (87%), Positives = 91/96 (94%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPR 96
Query: 332 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 439
HLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 97 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.2 68415.m04766 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 177 bits (432), Expect = 1e-44
Identities = 84/96 (87%), Positives = 91/96 (94%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPR 96
Query: 332 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 439
HLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 97 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.1 68415.m04765 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 177 bits (432), Expect = 1e-44
Identities = 84/96 (87%), Positives = 91/96 (94%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPR 96
Query: 332 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 439
HLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 97 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At4g13570.1 68417.m02114 histone H2A, putative similar to histone
H2A.F/Z from Arabidopsis thaliana GI:2407800, histone
H2A.F/Z Strongylocentrotus purpuratus SP|P08991, histone
H2A variant Drosophila melanogaster SP|P08985; contains
Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 118
Score = 138 bits (335), Expect = 7e-33
Identities = 66/88 (75%), Positives = 72/88 (81%)
Frame = +2
Query: 158 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 337
F V RIH+ LKNR ++H VGAT VY +ILEYLT EVL+LA N SKDLKVKRITPRHL
Sbjct: 31 FQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHL 90
Query: 338 QLAIRGDEELDSLIKATIAGGGVIPHIH 421
QLAIRGDEELD+LIK TI GG VIPHIH
Sbjct: 91 QLAIRGDEELDTLIKGTIIGGSVIPHIH 118
>At3g20670.1 68416.m02616 histone H2A, putative strong similarity to
histone H2A GB:AAF64418 GI:7595337 from Arabidopsis
thaliana, Triticum aestivum GI:536892; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 122 bits (294), Expect = 6e-28
Identities = 65/104 (62%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
LQFPVGRI R LKN + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRIARFLKNGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPR 83
Query: 332 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 460
H+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 84 HIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASKP 127
>At5g54640.1 68418.m06803 histone H2A identical to histone H2A
Arabidopsis thaliana GI:7595337
Length = 130
Score = 120 bits (288), Expect = 3e-27
Identities = 64/104 (61%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPR 83
Query: 332 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 460
H+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 84 HIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKP 127
>At4g27230.1 68417.m03910 histone H2A, putative strong similarity to
histone H2A Arabidopsis thaliana GI:7595337, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 120 bits (288), Expect = 3e-27
Identities = 64/104 (61%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPR 83
Query: 332 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 460
H+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 84 HIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKP 127
>At1g51060.1 68414.m05740 histone H2A, putative similar to histone
H2A GI:7595337 from Arabidopsis thaliana, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 120 bits (288), Expect = 3e-27
Identities = 64/104 (61%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRIARFLKKGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPR 83
Query: 332 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 460
H+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 84 HIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKP 127
>At1g08880.1 68414.m00988 histone H2A, putative Strong similarity to
histone H2A Cicer arietinum SP|O65759, Picea abies
SP|P35063; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4; ESTs gb|ATTS3874,gb|T46627,gb|T14194 come
from this gene
Length = 142
Score = 117 bits (281), Expect = 2e-26
Identities = 61/100 (61%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
LQFPVGRI R LK+ + RVGA A VY +A+LEYL AEVLELAGNA++D K RI PR
Sbjct: 31 LQFPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPR 89
Query: 332 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 448
H+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 90 HIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At1g54690.1 68414.m06235 histone H2A, putative strong similarity to
histone H2A GI:3204129 SP|O65759 from Cicer arietinum,
Picea abies SP|P35063; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 142
Score = 116 bits (278), Expect = 5e-26
Identities = 61/100 (61%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
LQFPVGRI R LK + RVGA A VY +A+LEYL AEVLELAGNA++D K RI PR
Sbjct: 31 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPR 89
Query: 332 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 448
H+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 90 HIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At5g02560.1 68418.m00190 histone H2A, putative similar to histone
H2A from Pisum sativum SP|P25470, Zea mays SP|P40280,
Petroselinum crispum SP|P19177; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 153
Score = 112 bits (270), Expect = 5e-25
Identities = 62/103 (60%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
LQFPVGRI R+LK S RVG A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 33 LQFPVGRIGRYLKKGRYSK-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPR 91
Query: 332 HLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGGPGA 457
H+ LA+R DEEL +L+K TIA GGV+P+I+ L+ KK A
Sbjct: 92 HVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAA 134
>At5g59870.1 68418.m07507 histone H2A, putative similar to histone
H2A Petroselinum crispum SP|P19177, Lycopersicon
esculentum SP|P25469, Zea mays SP|P40280; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 109 bits (261), Expect = 6e-24
Identities = 60/98 (61%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
LQFPVGRI R LK + R+G A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 33 LQFPVGRITRFLKKGRYAQ-RLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPR 91
Query: 332 HLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 442
HL LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 92 HLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129
>At5g27670.1 68418.m03317 histone H2A, putative similar to histone
H2A Lycopersicon esculentum SP|P25469, Pisum sativum
SP|P25470, Petroselinum crispum SP|P19177; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 107 bits (258), Expect = 1e-23
Identities = 60/98 (61%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Frame = +2
Query: 152 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 331
LQFPVGRI R+LK + R G+ A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 34 LQFPVGRIARYLKKGRYAL-RYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPR 92
Query: 332 HLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 442
HL LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 93 HLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 31.5 bits (68), Expect = 1.5
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +2
Query: 170 RIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 349
R+ RH HG GA AAI +YL +V + D +R+ R +I
Sbjct: 193 RVGRHWMRYYLLHGLPGAGKTSLVAAIAKYLNFDVYNITQGVKTDFDTRRLIRRVEDSSI 252
Query: 350 RGDEELDSLIKAT 388
E++D+ ++ +
Sbjct: 253 LLVEDIDTSLEGS 265
>At4g27840.1 68417.m03998 expressed protein
Length = 260
Score = 29.9 bits (64), Expect = 4.6
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 251 LEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR-GDEELDSLIKATIAGGGVIPHIHKS 427
L+ + AE+ + GN +KDL+++ +PR + I+ ++ LDS GG ++P + K
Sbjct: 117 LDPVFAEIAAIGGNHNKDLELEFGSPRSIAREIKSNNQSLDS--SKGRKGGALMPLLGKP 174
Query: 428 L 430
L
Sbjct: 175 L 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,283,649
Number of Sequences: 28952
Number of extensions: 453358
Number of successful extensions: 817
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4086763008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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