Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H09_e648_15.seq
         (1571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   209   7e-55
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   207   3e-54
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    37   0.007

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  209 bits (511), Expect = 7e-55
 Identities = 105/184 (57%), Positives = 125/184 (67%)
 Frame = +1

Query: 151 VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADV 330
           +  +LAA +H+G++N+  +ME YV+KRR DG H+INL +TWEK           E+PADV
Sbjct: 18  IKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADV 77

Query: 331 FVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 510
            VISSR +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D Q I
Sbjct: 78  CVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAI 137

Query: 511 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTNXFTLPXGLMWAGW*HXXVLRLRGCXSRX 690
            EAS+VNIPVIALC+TDS L  VD+AIP N   +    GL W       VLRLRG  SR 
Sbjct: 138 KEASFVNIPVIALCDTDSILNHVDVAIPINNKGYK-SIGLAWY-LLAREVLRLRGNISRT 195

Query: 691 XRWD 702
             W+
Sbjct: 196 TAWE 199



 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 717 LXFYRDPEXSEKEXQQXKEQXVLASXE 797
           L FYRDPE  E+E +Q       A  E
Sbjct: 204 LYFYRDPEEIEREEEQKAAAAAAAEEE 230


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  207 bits (506), Expect = 3e-54
 Identities = 102/184 (55%), Positives = 126/184 (68%)
 Frame = +1

Query: 151 VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADV 330
           + ++LAA  H+G++N+  +M+ YV+KRR DG H++NL +TWEK           E+PADV
Sbjct: 17  IKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADV 76

Query: 331 FVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 510
            V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D Q I
Sbjct: 77  CVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAI 136

Query: 511 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTNXFTLPXGLMWAGW*HXXVLRLRGCXSRX 690
            EAS+VNIPVIALC+TDS L  VDIAIP N N      GL+W       VLR+RG  SR 
Sbjct: 137 KEASFVNIPVIALCDTDSILNHVDIAIPTN-NKGRKSIGLIWY-LLAREVLRVRGTLSRS 194

Query: 691 XRWD 702
             WD
Sbjct: 195 APWD 198


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 463 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 600
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPAN 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,404
Number of Sequences: 5004
Number of extensions: 53067
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 886031778
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)