Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H09_e648_15.seq
         (1571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   200   2e-51
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   198   7e-51

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  200 bits (488), Expect = 2e-51
 Identities = 98/184 (53%), Positives = 119/184 (64%)
 Frame = +1

Query: 151 VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADV 330
           V  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK           E+P D+
Sbjct: 19  VQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDI 78

Query: 331 FVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 510
            V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI
Sbjct: 79  IVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPI 138

Query: 511 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTNXFTLPXGLMWAGW*HXXVLRLRGCXSRX 690
            E++  NIP IA C+TDSP+R+VDI IP N         L W       VL++RG     
Sbjct: 139 KESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWL--LARMVLQMRGTILPG 196

Query: 691 XRWD 702
            +WD
Sbjct: 197 HKWD 200


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  198 bits (484), Expect = 7e-51
 Identities = 97/184 (52%), Positives = 119/184 (64%)
 Frame = +1

Query: 151 VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADV 330
           +  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK           E+P D+
Sbjct: 19  IQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDI 78

Query: 331 FVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 510
            V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI
Sbjct: 79  IVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPI 138

Query: 511 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTNXFTLPXGLMWAGW*HXXVLRLRGCXSRX 690
            E++  NIP IA C+TDSP+R+VDI IP N         L W       VL++RG     
Sbjct: 139 KESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWL--LARMVLQMRGTILPG 196

Query: 691 XRWD 702
            +WD
Sbjct: 197 HKWD 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,961,693
Number of Sequences: 37544
Number of extensions: 401285
Number of successful extensions: 707
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5081723304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)