Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H09_e648_15.seq
         (1571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               244   1e-64
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   3.3  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  244 bits (598), Expect = 1e-64
 Identities = 120/185 (64%), Positives = 138/185 (74%), Gaps = 1/185 (0%)
 Frame = +1

Query: 151 VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADV 330
           V K LAA  HLGA N +FQME YVYKR+ DG ++IN+++TWEK           E+PADV
Sbjct: 15  VVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLLAARIIVTIENPADV 74

Query: 331 FVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 510
            VIS+R +GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP  DHQP+
Sbjct: 75  CVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPV 134

Query: 511 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTNXFTLPXGLMWAGW-*HXXVLRLRGCXSR 687
           TEASYVNIPVIA CNTDSPLR VD+AIPCN N      GLM+  W     VLR+RG  SR
Sbjct: 135 TEASYVNIPVIAFCNTDSPLRHVDVAIPCN-NKGIHSIGLMF--WLLAREVLRMRGSISR 191

Query: 688 XXRWD 702
              W+
Sbjct: 192 ALPWE 196


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 481 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 576
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,423,144
Number of Sequences: 59808
Number of extensions: 443202
Number of successful extensions: 648
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5141146326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)