Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_H09_e648_15.seq
(1571 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 199 5e-51
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 193 3e-49
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 193 3e-49
At1g80540.1 68414.m09441 expressed protein ; expression supporte... 32 1.2
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 31 1.6
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 4.8
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 199 bits (485), Expect = 5e-51
Identities = 96/184 (52%), Positives = 118/184 (64%)
Frame = +1
Query: 151 VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADV 330
V M AA HLG +N N+QME YV+KRR DG ++ NL +TWEK E+P D+
Sbjct: 19 VRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVAIENPQDI 78
Query: 331 FVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 510
V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI
Sbjct: 79 IVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPI 138
Query: 511 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTNXFTLPXGLMWAGW*HXXVLRLRGCXSRX 690
E + NIP+IA C+TDSP+RFVDI IP N L W VL++RG +
Sbjct: 139 KEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL--LARMVLQMRGTIAAG 196
Query: 691 XRWD 702
+WD
Sbjct: 197 QKWD 200
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 193 bits (470), Expect = 3e-49
Identities = 93/184 (50%), Positives = 116/184 (63%)
Frame = +1
Query: 151 VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADV 330
+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+K E+P D+
Sbjct: 20 IQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDI 79
Query: 331 FVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 510
V S+R +GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI
Sbjct: 80 IVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPI 139
Query: 511 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTNXFTLPXGLMWAGW*HXXVLRLRGCXSRX 690
E + NIP IA C+TDSP+ FVDI IP N L W VL++RG
Sbjct: 140 KEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWL--LARMVLQMRGTILAA 197
Query: 691 XRWD 702
+WD
Sbjct: 198 QKWD 201
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 193 bits (470), Expect = 3e-49
Identities = 93/184 (50%), Positives = 116/184 (63%)
Frame = +1
Query: 151 VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADV 330
+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+K E+P D+
Sbjct: 20 IQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDI 79
Query: 331 FVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 510
V S+R +GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI
Sbjct: 80 IVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPI 139
Query: 511 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTNXFTLPXGLMWAGW*HXXVLRLRGCXSRX 690
E + NIP IA C+TDSP+ FVDI IP N L W VL++RG
Sbjct: 140 KEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWL--LARMVLQMRGTILAA 197
Query: 691 XRWD 702
+WD
Sbjct: 198 QKWD 201
>At1g80540.1 68414.m09441 expressed protein ; expression supported
by MPSS
Length = 481
Score = 31.9 bits (69), Expect = 1.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 330 HISWILHGDNSTSSEYKLFPCTPKINYVRT 241
H + + G N T+S Y PC P +NY+RT
Sbjct: 79 HFNIYVDGWNVTNSHYIAPPCNPSLNYLRT 108
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 463 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 582
P ++V D + I EAS + IPV+A+ + + PL F +
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFE 170
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 4.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 418 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 519
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,258,642
Number of Sequences: 28952
Number of extensions: 298127
Number of successful extensions: 493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4231341888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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