Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H08_e640_16.seq
         (1524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         32   1.0  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 25/84 (29%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
 Frame = -1

Query: 1323 PQKXGVXGXPGXXXXPGXPRXX-PPREFXXXXGPPPGXVXLPXNXXXXXPP--XXXXPXX 1153
            P+K      P     P  P+   PP E      PPP  V LP       PP      P  
Sbjct: 1091 PEKSYPPSTPEESSPPSVPKASSPPTEKSL---PPPATVSLPPPTVKPLPPPVPVSSPPP 1147

Query: 1152 XXXSPPGGEPXXXXPPTGXXEXPP 1081
               SPP   P    PP      PP
Sbjct: 1148 PEKSPPPPAPVILPPPPIKSPPPP 1171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,008,597
Number of Sequences: 37544
Number of extensions: 591022
Number of successful extensions: 962
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4896089576
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)