Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H08_e640_16.seq
         (1524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    30   4.6  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   6.1  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    29   6.1  
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    29   6.1  
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    29   6.1  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    29   8.1  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   8.1  

>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 23/84 (27%), Positives = 24/84 (28%)
 Frame = -1

Query: 1332 TPXPQKXGVXGXPGXXXXPGXPRXXPPREFXXXXGPPPGXVXLPXNXXXXXPPXXXXPXX 1153
            +P P        P     P  P   PP        PPP  V  P       PP    P  
Sbjct: 525  SPPPPVYSPPPPPPPVHSPPPPVHSPPPPPVYSPPPPPPPVHSPPPPVFSPPPPVYSPPP 584

Query: 1152 XXXSPPGGEPXXXXPPTGXXEXPP 1081
               SPP   P    PP      PP
Sbjct: 585  PVHSPP--PPVHSPPPPAPVHSPP 606


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 17/59 (28%), Positives = 17/59 (28%)
 Frame = -1

Query: 1257 PPREFXXXXGPPPGXVXLPXNXXXXXPPXXXXPXXXXXSPPGGEPXXXXPPTGXXEXPP 1081
            PP        PPP     P       PP    P     SPP  EP     P      PP
Sbjct: 513  PPPPVYSSPPPPPSPAPTPVYCTRPPPPPPHSPPPPQFSPPPPEPYYYSSPPPPHSSPP 571


>At3g24540.1 68416.m03082 protein kinase family protein contains
            protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 21/79 (26%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
 Frame = -1

Query: 1227 PPPGXVXLPXNXXXXXPPXXXXPXXXXXS--PPGGEPXXXXPPTGXXEXPPXVXXXXGXX 1054
            PPP  V +P       PP    P     S  PP   P    PP      PP      G  
Sbjct: 42   PPPPQVFVPEPLFSEPPPPPKAPVNVSLSPPPPPRSPSTSTPPRLGNRNPPPPASPSGQE 101

Query: 1053 AKTFPXXGFFMXXPXGHXR 997
              T      F   P    R
Sbjct: 102  PTTPTMTPGFSLSPPSPSR 120


>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical to
            gi|10880495|gb|AAG24277
          Length = 176

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/72 (26%), Positives = 19/72 (26%)
 Frame = -1

Query: 1296 PGXXXXPGXPRXXPPREFXXXXGPPPGXVXLPXNXXXXXPPXXXXPXXXXXSPPGGEPXX 1117
            P     P  P   PP         PP     P       PP    P     SPP   P  
Sbjct: 27   PTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPP--ANPPPPVSSPPPASPPP 84

Query: 1116 XXPPTGXXEXPP 1081
              PP      PP
Sbjct: 85   ATPPPVASPPPP 96


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical to
            gi|10880495|gb|AAG24277
          Length = 191

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/72 (26%), Positives = 19/72 (26%)
 Frame = -1

Query: 1296 PGXXXXPGXPRXXPPREFXXXXGPPPGXVXLPXNXXXXXPPXXXXPXXXXXSPPGGEPXX 1117
            P     P  P   PP         PP     P       PP    P     SPP   P  
Sbjct: 27   PTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPP--ANPPPPVSSPPPASPPP 84

Query: 1116 XXPPTGXXEXPP 1081
              PP      PP
Sbjct: 85   ATPPPVASPPPP 96


>At5g17650.1 68418.m02069 glycine/proline-rich protein
            glycine/proline-rich protein GPRP - Arabidopsis thaliana,
            EMBL:X84315
          Length = 173

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
 Frame = -1

Query: 1140 PPGGEPXXXXPPTGXXE---XPPXVXXXXGXXAKTFPXXGFFMXXPXGHXRGG 991
            PP G P    PP G       PP      G  A  +P  G+      GH  GG
Sbjct: 50   PPHGYPPVAYPPHGGYPPAGYPPAGYPPAGYPAHGYPSHGYPRPSHSGHHHGG 102


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 22/76 (28%), Positives = 22/76 (28%)
 Frame = -1

Query: 1308 VXGXPGXXXXPGXPRXXPPREFXXXXGPPPGXVXLPXNXXXXXPPXXXXPXXXXXSPPGG 1129
            V   P     P  P   PP        PPP  V  P       PP    P     SPP  
Sbjct: 563  VHSPPPPVHSPPPPVHSPPPPVYS---PPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPP 619

Query: 1128 EPXXXXPPTGXXEXPP 1081
             P    PP      PP
Sbjct: 620  PPVHSPPPPVFSPPPP 635


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,369,751
Number of Sequences: 28952
Number of extensions: 448107
Number of successful extensions: 874
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4077124416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)