Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H07_e632_15.seq
         (1569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical ...    31   2.2  
AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical ...    31   2.2  

>AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.7 protein.
          Length = 239

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +1

Query: 46  YPRVCRQFXTR*EKLWEEXFXMNKHLIIFLAVCFISXHAFVKRDAEAASTGNAFSEIEKQ 225
           Y  + R    + EK+      + K ++   A CF++ H     D  AAS     ++ ++ 
Sbjct: 31  YRGLIRDIGQQLEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQA 90

Query: 226 FVEIK--KQVQENFKPDNVKKQ 285
               K  K++ +NFK  + K+Q
Sbjct: 91  IGNKKTLKELHDNFKSSDTKQQ 112


>AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.3 protein.
          Length = 239

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +1

Query: 46  YPRVCRQFXTR*EKLWEEXFXMNKHLIIFLAVCFISXHAFVKRDAEAASTGNAFSEIEKQ 225
           Y  + R    + EK+      + K ++   A CF++ H     D  AAS     ++ ++ 
Sbjct: 31  YRGLIRDIGQQLEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQA 90

Query: 226 FVEIK--KQVQENFKPDNVKKQ 285
               K  K++ +NFK  + K+Q
Sbjct: 91  IGNKKTLKELHDNFKSSDTKQQ 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,039,878
Number of Sequences: 27780
Number of extensions: 214418
Number of successful extensions: 533
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4535578426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)