Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H06_e624_16.seq
         (1512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   219   6e-58
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    44   6e-05
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   3.9  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    27   6.8  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  219 bits (536), Expect = 6e-58
 Identities = 109/236 (46%), Positives = 149/236 (63%)
 Frame = +3

Query: 57  AQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 236
           +QQM  +R  LRG + ++MGKNTM+R+A++  +   P LE+LLP ++GNVGFVFT  DL 
Sbjct: 35  SQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLK 94

Query: 237 DVRDKLLENXVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGXIEIIN 416
           +VR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++G IEI +
Sbjct: 95  EVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITS 154

Query: 417 DVHILKPGDKVGASEATLLNMLNXXPFSYGLVVKQVYDSGTIXAPAILRHXAGGPFXRXF 596
           DVH++    KVG SEATLLNMLN  PF+YG+ V  +YD G + +P IL   +        
Sbjct: 155 DVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEIL-DVSEEDLIGHL 213

Query: 597 LAGVANXAALSLXIRXPTVAXXPHXIPIGSRNLXAIASVTEXXXQEXXHHXGHLXD 764
           L+  +   A+SL    PT+    H +    +NL A++  TE   +        L D
Sbjct: 214 LSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLAD 269


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
 Frame = +3

Query: 66  MQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVD 239
           +++IR   +G S + MGK  +M KA+    E   A  + KL   + G VG +FT     +
Sbjct: 53  LKRIRDDWKG-SRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDE 111

Query: 240 VRDKLLENXVQAP-ARPGAIAPLSVVIPA----HNTGLGPEKTSFF---------QALSI 377
           V     E+ VQ   AR GA+AP + VIPA       G  P +             + L +
Sbjct: 112 VIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGM 170

Query: 378 PTKISKGXIEIINDVHILKPGDKVGASEATLLNM--LNXXPFSYGLV 512
           PT +  G + ++ D  +   G ++ + +  LL +  +    F  GL+
Sbjct: 171 PTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLL 217


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 412 IISIXPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 287
           IIS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 11  PSN*WIPRAAGNSARGATDATDPYFIAWSQHCAHGQKHH--DEESHQGPS*NKSSSRKTA 184
           P + W P +     R + D +  Y      + ++  + H  D+E     S +KS SRKTA
Sbjct: 238 PEDIWGPSSKSTKRRDSADRSSSYSRRGDSYRSNRSRAHDDDDEDDYSFSRSKSLSRKTA 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,337,975
Number of Sequences: 5004
Number of extensions: 56273
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 846388298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)