Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_H06_e624_16.seq
(1512 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 221 1e-57
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 220 2e-57
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 220 2e-57
07_01_0113 + 840866-841574,841687-842210,842391-842840,843541-84... 32 1.4
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 31 3.1
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 30 5.5
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 221 bits (540), Expect = 1e-57
Identities = 110/223 (49%), Positives = 151/223 (67%), Gaps = 2/223 (0%)
Frame = +3
Query: 57 AQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGD 230
+ Q+Q+IR LRG SIVLMGKNT++R+ IK H + N +L+P + GNVG +FT+GD
Sbjct: 38 SNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGD 97
Query: 231 LVDVRDKLLENXVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGXIEI 410
L +VR+++ + V APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KG +EI
Sbjct: 98 LKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEI 157
Query: 411 INDVHILKPGDKVGASEATLLNMLNXXPFSYGLVVKQVYDSGTIXAPAILRHXAGGPFXR 590
I V ++K GDKVG+SE+ LL L PFSYGLV+ VYDSG++ +P +L
Sbjct: 158 ITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVL-DLTEDDLME 216
Query: 591 XFLAGVANXAALSLXIRXPTVAXXPHXIPIGSRNLXAIASVTE 719
F +GV+ A++SL I PT+A PH G +N+ A+A TE
Sbjct: 217 KFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETE 259
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 220 bits (538), Expect = 2e-57
Identities = 110/223 (49%), Positives = 151/223 (67%), Gaps = 2/223 (0%)
Frame = +3
Query: 57 AQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGD 230
+ Q+Q+IR LRG SIVLMGKNT++R+ IK H + N +L+P + GNVG +FT+GD
Sbjct: 38 SNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGD 97
Query: 231 LVDVRDKLLENXVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGXIEI 410
L +VR+++ + V APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KG +EI
Sbjct: 98 LKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEI 157
Query: 411 INDVHILKPGDKVGASEATLLNMLNXXPFSYGLVVKQVYDSGTIXAPAILRHXAGGPFXR 590
I V ++K GDKVG+SE+ LL L PFSYGLV+ VYDSG++ +P +L
Sbjct: 158 ITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVL-DLTEEDLME 216
Query: 591 XFLAGVANXAALSLXIRXPTVAXXPHXIPIGSRNLXAIASVTE 719
F +GV+ A++SL I PT+A PH G +N+ A+A TE
Sbjct: 217 KFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETE 259
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 220 bits (538), Expect = 2e-57
Identities = 110/223 (49%), Positives = 151/223 (67%), Gaps = 2/223 (0%)
Frame = +3
Query: 57 AQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGD 230
+ Q+Q+IR LRG SIVLMGKNT++R+ IK H + N +L+P + GNVG +FT+GD
Sbjct: 38 SNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGD 97
Query: 231 LVDVRDKLLENXVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGXIEI 410
L +VR+++ + V APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KG +EI
Sbjct: 98 LKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEI 157
Query: 411 INDVHILKPGDKVGASEATLLNMLNXXPFSYGLVVKQVYDSGTIXAPAILRHXAGGPFXR 590
I V ++K GDKVG+SE+ LL L PFSYGLV+ VYDSG++ +P +L
Sbjct: 158 ITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVL-DLTEEDLME 216
Query: 591 XFLAGVANXAALSLXIRXPTVAXXPHXIPIGSRNLXAIASVTE 719
F +GV+ A++SL I PT+A PH G +N+ A+A TE
Sbjct: 217 KFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETE 259
>07_01_0113 +
840866-841574,841687-842210,842391-842840,843541-843699
Length = 613
Score = 31.9 bits (69), Expect = 1.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 646 GXRMXNESAAXLATPARKXLXKGPPAXCRRIAGAK 542
G RM E A +A ARK L PA C + GA+
Sbjct: 563 GTRMRKEEALSIAGHARKLLAAAVPAFCTGVIGAR 597
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 30.7 bits (66), Expect = 3.1
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +3
Query: 168 ALEKL-LPH--IKGNVGFVFTRGDLVDVRDKLLENXVQAPARPGAIAPLSV----VIPAH 326
AL+KL LPH ++GN+GF+ + + + D +L++ A P + LS I H
Sbjct: 401 ALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLSARLISFIADH 460
Query: 327 N--TGLGPEKTSFFQALSI 377
N G PEK S +L +
Sbjct: 461 NKLAGSLPEKMSNLSSLEL 479
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 29.9 bits (64), Expect = 5.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -2
Query: 299 SNGSRTSRGLDXVLQQFITHINKISTGEDKANISLD 192
+NG+R G + L+Q++T + ++TGE K ++ +
Sbjct: 63 NNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFE 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,589,100
Number of Sequences: 37544
Number of extensions: 437633
Number of successful extensions: 1174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4849681144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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