Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H06_e624_16.seq
         (1512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        196   5e-50

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  196 bits (477), Expect = 5e-50
 Identities = 92/133 (69%), Positives = 110/133 (82%)
 Frame = +3

Query: 57  AQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 236
           ++QMQ IR SLRG   VLMGKNTM+RKAI+ HLE NP LEKLLPHIKGN+GFVFT+ DL 
Sbjct: 19  SKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLA 78

Query: 237 DVRDKLLENXVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGXIEIIN 416
           DVR  ++EN V APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++G IEIIN
Sbjct: 79  DVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIIN 138

Query: 417 DVHILKPGDKVGA 455
           DVH++K  +K+ A
Sbjct: 139 DVHLIKKDEKLKA 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,637,272
Number of Sequences: 59808
Number of extensions: 471262
Number of successful extensions: 1334
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4906390786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)