Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H06_e624_16.seq
         (1512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   275   5e-74
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    46   5e-05

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  275 bits (675), Expect = 5e-74
 Identities = 130/226 (57%), Positives = 169/226 (74%)
 Frame = +3

Query: 57  AQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 236
           ++QMQ+IR ++RGH+ +LMGKNTM+RKA++ HL  NP+LEKLLPHI  NVGFVFT+ DL 
Sbjct: 37  SKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLG 96

Query: 237 DVRDKLLENXVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGXIEIIN 416
           ++R KLLEN   APA+ GAIAP  V +P  NTG+GPEKTSFFQAL IPTKI++G IEI+N
Sbjct: 97  EIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILN 156

Query: 417 DVHILKPGDKVGASEATLLNMLNXXPFSYGLVVKQVYDSGTIXAPAILRHXAGGPFXRXF 596
           DVH++K GDKVGASE+ LLNML   PFSYGLVV+QVYD GT+  P +L         + F
Sbjct: 157 DVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVL-DMTTEELRKRF 215

Query: 597 LAGVANXAALSLXIRXPTVAXXPHXIPIGSRNLXAIASVTEXXXQE 734
           L+GV N A++SL +  PT+A   H +  G +N+  +A+VT+   +E
Sbjct: 216 LSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKE 261


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 46.4 bits (105), Expect = 5e-05
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 3/151 (1%)
 Frame = +3

Query: 75  IRISLRGHSIVLMGKNTMMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRD 248
           IR   + +S    GKN ++  A+        A  L K    +KG  G +FT     +V  
Sbjct: 56  IRQKYKENSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEA 115

Query: 249 KLLENXVQAPARPGAIAPLSVVIP-AHNTGLGPEKTSFFQALSIPTKISKGXIEIINDVH 425
           +  E   +  AR G +A  +VV+P    +          + L +PTK+ KG I +     
Sbjct: 116 EFSEASEEDYARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFE 175

Query: 426 ILKPGDKVGASEATLLNMLNXXPFSYGLVVK 518
           + K G+ +   +A +L         + L+ K
Sbjct: 176 VCKEGEPLTVEQAKILKHFEVKMSQFRLIFK 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,272,825
Number of Sequences: 27780
Number of extensions: 342459
Number of successful extensions: 970
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4360398082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)