Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_H06_e624_16.seq
(1512 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 220 2e-57
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 217 2e-56
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 215 8e-56
At3g50610.1 68416.m05534 hypothetical protein 31 2.0
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 31 2.6
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 220 bits (537), Expect = 2e-57
Identities = 113/236 (47%), Positives = 152/236 (64%), Gaps = 2/236 (0%)
Frame = +3
Query: 63 QMQQIRISLRGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLV 236
Q+Q IR LRG S+VLMGKNTMM+++++ H + N A LLP ++GNVG +FT+GDL
Sbjct: 40 QLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLK 99
Query: 237 DVRDKLLENXVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGXIEIIN 416
+V +++ + V APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KG +EII
Sbjct: 100 EVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 159
Query: 417 DVHILKPGDKVGASEATLLNMLNXXPFSYGLVVKQVYDSGTIXAPAILRHXAGGPFXRXF 596
V ++K GDKVG+SEA LL L PFSYGLVV+ VYD+G++ P +L + F
Sbjct: 160 PVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVL-NLTEDDLVEKF 218
Query: 597 LAGVANXAALSLXIRXPTVAXXPHXIPIGSRNLXAIASVTEXXXQEXXHHXGHLXD 764
AGV+ ALSL I PTVA PH +N+ A+A TE + + L D
Sbjct: 219 AAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKD 274
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 217 bits (529), Expect = 2e-56
Identities = 109/236 (46%), Positives = 152/236 (64%), Gaps = 2/236 (0%)
Frame = +3
Query: 63 QMQQIRISLRGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLV 236
Q+Q IR LRG S+VLMGKNTMM+++++ H E N A+ LLP ++GNVG +FT+GDL
Sbjct: 39 QLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLK 98
Query: 237 DVRDKLLENXVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGXIEIIN 416
+V +++ + V APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KG +EII
Sbjct: 99 EVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 158
Query: 417 DVHILKPGDKVGASEATLLNMLNXXPFSYGLVVKQVYDSGTIXAPAILRHXAGGPFXRXF 596
V ++K GDKVG+SEA LL L PFSYGLVV+ VYD+G++ +P +L F
Sbjct: 159 PVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVL-DLTEDQLVEKF 217
Query: 597 LAGVANXAALSLXIRXPTVAXXPHXIPIGSRNLXAIASVTEXXXQEXXHHXGHLXD 764
+G++ +L+L + PT+A PH +N AIA TE + +L D
Sbjct: 218 ASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKD 273
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 215 bits (524), Expect = 8e-56
Identities = 106/221 (47%), Positives = 148/221 (66%), Gaps = 2/221 (0%)
Frame = +3
Query: 63 QMQQIRISLRGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLV 236
Q+Q IR LRG S+VLMGKNTMM+++++ H E N A+ LLP ++GNVG +FT+GDL
Sbjct: 39 QLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLK 98
Query: 237 DVRDKLLENXVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGXIEIIN 416
+V +++ + V APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KG +EII
Sbjct: 99 EVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 158
Query: 417 DVHILKPGDKVGASEATLLNMLNXXPFSYGLVVKQVYDSGTIXAPAILRHXAGGPFXRXF 596
V ++K GDKVG+SEA LL L PFSYGLVV+ VYD+G++ +P +L F
Sbjct: 159 PVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVL-DLTEDQLVEKF 217
Query: 597 LAGVANXAALSLXIRXPTVAXXPHXIPIGSRNLXAIASVTE 719
+G++ +L+L + PT+A PH +N AIA T+
Sbjct: 218 ASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATD 258
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 31.1 bits (67), Expect = 2.0
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 147 DHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD-KLLENXVQAPARPGAIAPLSVVIPA 323
D + T+P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 324 HNTGLGPEK 350
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
Pfam profile PF04434: SWIM zinc finger
Length = 750
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -2
Query: 614 VGHSSKETSRERSSGXMSKNCRRXDGXGVVHLFDNKTIRKGXXVQHVEKSSFRS 453
+G SSK + + R + GVVHL D+ T+ K HV K S
Sbjct: 131 LGGSSKRQKTDIHVKLERETDRNSESDGVVHLVDSSTLNKDSISGHVSKPCMSS 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,447,854
Number of Sequences: 28952
Number of extensions: 324761
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4038570048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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