Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H04_e608_16.seq
         (1587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   201   2e-52
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    31   0.33 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    31   0.58 
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   9.5  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  201 bits (491), Expect = 2e-52
 Identities = 100/187 (53%), Positives = 134/187 (71%), Gaps = 2/187 (1%)
 Frame = +1

Query: 100 VRKSSKRVL*NPTPSXTSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIY 273
           + K  KR    PT +   ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++
Sbjct: 4   LNKIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVF 63

Query: 274 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 453
           VP P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT
Sbjct: 64  VPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLT 121

Query: 454 SVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGR 633
           +V++AILED+VFP EI+GKR R   DG + IKV LD     T+++K+ +F SVY KLTG+
Sbjct: 122 AVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGK 181

Query: 634 EVTFEFP 654
            VTFEFP
Sbjct: 182 NVTFEFP 188


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query: 442 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 618
           ++L + YD + EDL   ++ +GK+  ++   ++L  VHL  +   TIE  +  F Q+V  
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621

Query: 619 KLTGREVTFEFP 654
           + T    +F+ P
Sbjct: 622 QSTKSTASFQLP 633


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +1

Query: 355  HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 534
            H V V D+ +   P       N+Q   R  +L+ + D + +  V   E V  R   K  G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650

Query: 535  SQLIKVHLD-KNQQTTIEHKV 594
            S ++   LD K+ Q   EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 268 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 360
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,987,629
Number of Sequences: 5004
Number of extensions: 88094
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 895942648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)