Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_H04_e608_16.seq
(1587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 229 3e-60
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 31 2.3
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 30 5.2
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 30 5.2
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 29 9.1
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 29 9.1
AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical ... 29 9.1
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 229 bits (561), Expect = 3e-60
Identities = 105/170 (61%), Positives = 139/170 (81%), Gaps = 1/170 (0%)
Frame = +1
Query: 154 ISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVREL 333
+SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P+LKAF KI LVREL
Sbjct: 23 VSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQLKAFHKIHPALVREL 82
Query: 334 EKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 510
EKKF G+ ++ + R+ILPKP ++ KQKRPRSRTLT+V+DA L++LV+PAE+VG+
Sbjct: 83 EKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGR 142
Query: 511 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 660
RIRVKLDG ++ KVHLDK+ QT + HK+ F SVY+KLTG++VTFEFP+P
Sbjct: 143 RIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 31.1 bits (67), Expect = 2.3
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +1
Query: 136 TPSXTSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQI 315
TP TSI Q L+ ++ + + E ++ +K+IE+H + + + QK +
Sbjct: 2210 TPESTSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDYEKTQKYDL 2269
Query: 316 RLVRELEKKFSGKHVVFV 369
+LV K F+
Sbjct: 2270 KLVATSSGKQVSSEAEFI 2287
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 31.1 bits (67), Expect = 2.3
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +1
Query: 136 TPSXTSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQI 315
TP TSI Q L+ ++ + + E ++ +K+IE+H + + + QK +
Sbjct: 2210 TPESTSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDYEKTQKYDL 2269
Query: 316 RLVRELEKKFSGKHVVFV 369
+LV K F+
Sbjct: 2270 KLVATSSGKQVSSEAEFI 2287
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 31.1 bits (67), Expect = 2.3
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +1
Query: 136 TPSXTSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQI 315
TP TSI Q L+ ++ + + E ++ +K+IE+H + + + QK +
Sbjct: 2210 TPESTSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDYEKTQKYDL 2269
Query: 316 RLVRELEKKFSGKHVVFV 369
+LV K F+
Sbjct: 2270 KLVATSSGKQVSSEAEFI 2287
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.9 bits (64), Expect = 5.2
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -1
Query: 1326 GPPFQNPXPXGKGXGGXQGXXXXXXGXXXFSSXXG 1222
GPP + P P K GG G G + + G
Sbjct: 1048 GPPIRRPRPKNKNSGGGSGGSGGSGGSRAYKTGNG 1082
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.9 bits (64), Expect = 5.2
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -1
Query: 1326 GPPFQNPXPXGKGXGGXQGXXXXXXGXXXFSSXXG 1222
GPP + P P K GG G G + + G
Sbjct: 1145 GPPIRRPRPKNKNSGGGSGGSGGSGGSRAYKTGNG 1179
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 29.1 bits (62), Expect = 9.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 1271 PXXPPXPLPXGXGFWNGGPXXFKPNFPEXPEV 1366
P PP P P NGGP FK F + +
Sbjct: 315 PPPPPEPAPAREKVENGGPTTFKMTFKKAANI 346
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 29.1 bits (62), Expect = 9.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 1271 PXXPPXPLPXGXGFWNGGPXXFKPNFPEXPEV 1366
P PP P P NGGP FK F + +
Sbjct: 329 PPPPPEPAPAREKVENGGPTTFKMTFKKAANI 360
>AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical
protein Y77E11A.9 protein.
Length = 296
Score = 29.1 bits (62), Expect = 9.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 490 GIPDLPIWRHIQKSVSWNGAFSVCWLHVSCGWAW 389
GIP+ + S++W+G + C+ +C AW
Sbjct: 5 GIPNTTNNTQVNTSLTWDGCLTACFYSPACVMAW 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,398,805
Number of Sequences: 27780
Number of extensions: 540687
Number of successful extensions: 1114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4597851814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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