Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_H04_e608_16.seq
(1587 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 184 2e-46
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 183 3e-46
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 183 3e-46
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 177 2e-44
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 177 2e-44
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ... 30 3.7
At4g27060.1 68417.m03891 expressed protein 30 4.9
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 184 bits (447), Expect = 2e-46
Identities = 91/176 (51%), Positives = 130/176 (73%), Gaps = 2/176 (1%)
Frame = +1
Query: 133 PTPSXTSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQK 306
PT ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP KAF+K
Sbjct: 16 PTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRLRKAFRK 75
Query: 307 IQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLV 486
I RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV++A+LED+
Sbjct: 76 IHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVA 131
Query: 487 FPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 654
FPAEIVGKR R +LDGS+++KV LD ++ E+K++T VY+KLTG++V FE+P
Sbjct: 132 FPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 183 bits (446), Expect = 3e-46
Identities = 89/176 (50%), Positives = 132/176 (75%), Gaps = 2/176 (1%)
Frame = +1
Query: 133 PTPSXTSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQK 306
PT ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP KAF+K
Sbjct: 16 PTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRK 75
Query: 307 IQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLV 486
I +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+
Sbjct: 76 IHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVA 131
Query: 487 FPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 654
+PAEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 132 YPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 183 bits (446), Expect = 3e-46
Identities = 89/176 (50%), Positives = 132/176 (75%), Gaps = 2/176 (1%)
Frame = +1
Query: 133 PTPSXTSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQK 306
PT ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP KAF+K
Sbjct: 16 PTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRK 75
Query: 307 IQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLV 486
I +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+
Sbjct: 76 IHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVA 131
Query: 487 FPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 654
+PAEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 132 YPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 177 bits (430), Expect = 2e-44
Identities = 86/169 (50%), Positives = 128/169 (75%), Gaps = 2/169 (1%)
Frame = +1
Query: 154 ISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVR 327
++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP KA++KI +RLVR
Sbjct: 23 VAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVR 82
Query: 328 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 507
ELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVG
Sbjct: 83 ELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVG 138
Query: 508 KRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 654
KR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 139 KRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 177 bits (430), Expect = 2e-44
Identities = 86/169 (50%), Positives = 128/169 (75%), Gaps = 2/169 (1%)
Frame = +1
Query: 154 ISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVR 327
++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP KA++KI +RLVR
Sbjct: 23 VAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVR 82
Query: 328 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 507
ELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVG
Sbjct: 83 ELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVG 138
Query: 508 KRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 654
KR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 139 KRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
profile PF02453: Reticulon
Length = 457
Score = 30.3 bits (65), Expect = 3.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 505 QQSRPGIPDLPIWRHIQKSVSWNGAFSVCWL 413
++ R I DL +WR + KS W G +C+L
Sbjct: 189 ERIRENISDLIMWRDVAKSTLWFGFGCICFL 219
>At4g27060.1 68417.m03891 expressed protein
Length = 864
Score = 29.9 bits (64), Expect = 4.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 804 GKPWRYPT*SXCXXPPFASWRNSQXGPHRSP 896
G+ W PP A+ RN Q GP RSP
Sbjct: 606 GRMWNSDMADDWFIPPHAASRNGQAGPRRSP 636
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,103,649
Number of Sequences: 28952
Number of extensions: 499638
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4279534848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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