Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H03_e600_15.seq
         (1526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    85   2e-17
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    29   2.2  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    27   5.2  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 43/99 (43%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
 Frame = +3

Query: 216 ISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARD-KTKVAINADI 392
           +S K+ ID T    D I DV  FEKYL +R+KV+GKT NLG+ VV++R+  +K+A+ A I
Sbjct: 8   VSNKYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHI 67

Query: 393 PFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDSYELRYF 509
            FS                  DWLRVV++    YELRY+
Sbjct: 68  DFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = -2

Query: 346 T*LPRLFVLPSTLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIF-LLAPLPRILPPFTP 170
           T +P+L  L   +T  +  F++    R+    G ++++  L ++F +L  L RI+ PFTP
Sbjct: 714 TVVPQLLGLIEEMTNWYIRFNR---RRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTP 770

Query: 169 FL 164
           F+
Sbjct: 771 FI 772


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 658 PSFYXVVTGKTPGVTQLIRLAAHSPFRQLAYSEXAR 765
           PS   VVTG   G+T L R+   S  R  AY E +R
Sbjct: 660 PSSIYVVTGTYRGMTLLFRIDPSSSGRFSAYFESSR 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,948,077
Number of Sequences: 5004
Number of extensions: 67432
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 856299168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)