Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H02_e592_16.seq
         (1499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    30   0.95 
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    29   1.3  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   5.1  

>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 199 IQRIFFLSIMFLV*YNYFYFIILNINWNFQW-FIF 98
           I R+ F S++F++  + FYF+  ++    QW F+F
Sbjct: 409 ILRVLFFSLLFIIGIHIFYFLFFHVATIQQWPFLF 443


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/63 (20%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +2

Query: 551 LDVRRTTKKRENKKDDLTREMK--VDAEKNRRKKTANVEERRQRSPKTAIVEERRLPSPK 724
           L+ +R   +R+  KD+  R  K  ++ EK  +++   +EE++ +  +   +++ ++ + +
Sbjct: 118 LEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKR 177

Query: 725 KED 733
           KE+
Sbjct: 178 KEE 180


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = -2

Query: 496 RLLSSYDSLLVFSYEIVFFINTIFIRPYRLNGQLKLNNFVD*HNCYKFSQIIIIFL 329
           RLL+  D L+ + Y     I  + +   R++  L + +F+D H+C+  S II++ L
Sbjct: 595 RLLT--DKLISYCYSSALHIVDLLVL-LRMHKFLSVYSFMDYHSCHAASFIILVHL 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,093,762
Number of Sequences: 5004
Number of extensions: 74034
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 838459602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)