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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H02_e592_16.seq
         (1499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    36   0.069
At3g28770.1 68416.m03591 expressed protein                             34   0.28 
At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N domain-...    33   0.49 
At4g36700.1 68417.m05208 cupin family protein low similarity to ...    33   0.64 
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    33   0.64 
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu...    32   0.85 
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu...    32   0.85 
At4g11100.1 68417.m01802 expressed protein                             32   0.85 
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    32   0.85 
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-...    32   1.1  
At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /...    32   1.1  
At5g46020.1 68418.m05659 expressed protein                             31   1.5  
At5g36650.1 68418.m04383 hypothetical protein                          31   1.5  
At4g02110.1 68417.m00282 BRCT domain-containing protein contains...    31   1.5  
At4g26630.1 68417.m03837 expressed protein                             31   2.0  
At5g41320.1 68418.m05022 expressed protein                             30   3.4  
At4g35940.1 68417.m05113 expressed protein                             30   3.4  
At5g57120.1 68418.m07132 expressed protein weak similarity to SP...    29   6.0  
At3g51650.1 68416.m05664 expressed protein                             29   6.0  
At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMP...    29   6.0  
At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMP...    29   6.0  
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    29   6.0  
At2g16485.1 68415.m01889 expressed protein ; expression supporte...    29   7.9  
At1g29570.1 68414.m03616 zinc finger protein-related contains si...    29   7.9  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
            protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 35.9 bits (79), Expect = 0.069
 Identities = 39/169 (23%), Positives = 60/169 (35%), Gaps = 1/169 (0%)
 Frame = +2

Query: 560  RRTTKKRENKKDDLTREMKVDAEKNRRKKTANVEERRQRSPKTAIVEERRLPSPKKEDCT 739
            RR T +   +    +R  +  +   RR+++ +   RR+RSP       R    P ++  +
Sbjct: 293  RRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRS 352

Query: 740  XDEG*LHRR*KMTAPPRKMTAPPRR*LHXREEXSQPAEKXXRRNCTAEKRLXXXXEXAPX 919
                    R    A  R+  +PP R    R   S PA    RR  +           +P 
Sbjct: 353  PSPPARRHRSPPPARRRRSPSPPAR---RRRSPSPPA----RRRRSPSPLYRRNRSPSPL 405

Query: 920  XRNXIXXKXLHPRXETASPKRX-APXKRTASPKGTAXXKETXPQKNPPP 1063
             R       L  R  + SP R  +P  R   P G      +  Q+ P P
Sbjct: 406  YRRNRSRSPLAKRGRSDSPGRSPSPVARLRDPTGARLPSPSIEQRLPSP 454


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +2

Query: 575  KRENKKDDLTREMKVDAEKNRRKKTANVEERRQRSPKTAIVEERRLPSPKKEDCTXDE 748
            K ENK +   +E +  A KNR KK    EE++ ++ + A  E+++    K+E+   +E
Sbjct: 990  KEENKDNKEKKESEDSASKNREKK--EYEEKKSKTKEEAKKEKKKSQDKKREEKDSEE 1045


>At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N
           domain-containing protein weak similarity to SP|P45974
           Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)
           {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N
           domain
          Length = 413

 Score = 33.1 bits (72), Expect = 0.49
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
 Frame = +3

Query: 516 SKDTKKRGKPENWT*EEQLKRGRTRKMI*RGK*K*TPKRTGE----RRLQMLKKEDSD-- 677
           +++ ++R + +    E++++R R ++ I  GK     KR  E    +RL  L+K + +  
Sbjct: 185 AQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRMEEVNERKRLMFLRKAEKEEE 244

Query: 678 ---RRRLQSSKKEDCHRRRRKTAPPMKDDCTA 764
              R +++   +ED   RRRK   P +D  TA
Sbjct: 245 KRAREKIRQKLEEDKAERRRKLGLPPEDPATA 276


>At4g36700.1 68417.m05208 cupin family protein low similarity to
           preproMP27-MP32 from Cucurbita cv. Kurokawa Amakuri
           [GI:691752]; contains Pfam profile PF00190: Cupin
          Length = 522

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
 Frame = +2

Query: 515 IKRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDAEKNRRKKTANVEERR---QRSPK 685
           I++ +   E  K+D  R  +  E KK++   E K + E+ RRK+    E++R   Q+ P+
Sbjct: 443 IEKLKVEIERKKIDDERKRRHDERKKEE--EEAKRE-EEERRKREEEEEKKRWPPQQPPQ 499

Query: 686 TAIVEERRLPSPKKEDCTXDE 748
              + ER+LP  K+ +   +E
Sbjct: 500 EEELRERQLPMEKEWEMEGEE 520


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
            (SR45) similar to arginine/serine-rich protein GI:6601502
            from [Arabidopsis thaliana]
          Length = 414

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
 Frame = +2

Query: 764  R*KMTAPPRKMTAPPRR*LHXREEXSQPAEKXXRRNCTAEKRLXXXXEXAPXXRNXIXXK 943
            R K+++PP+ ++A P+R     +  +  AEK        E         +P  R+ +  +
Sbjct: 178  RQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRRSPLPRR 237

Query: 944  XLHPRXETA-SPKRXAP----XKRTASP--KGTAXXKETXPQKNPPPKRTAS 1078
             L PR  +  SP R  P     +R  +P  +  A         +PPP+R  S
Sbjct: 238  GLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRS 289



 Score = 32.3 bits (70), Expect = 0.85
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 6/156 (3%)
 Frame = +2

Query: 623  AEKNRRKKTANVEERRQRSPKTAIVEERRLPSPKKEDCTXDEG*LHRR*KMTAPPRKMTA 802
            A  +R +  ++   RR RSP        R  SP +         L RR   + PPR++ +
Sbjct: 271  ASPSRGRSPSSPPPRRYRSPPRGSPRRIR-GSPVRRRSPLP---LRRR---SPPPRRLRS 323

Query: 803  PPRR*LHXREEXSQPAEKXXRRNCTAEKRLXXXXEXAPXXRNXIXXKXLHPR------XE 964
            PPRR    R     P  +  R   ++              R+        PR        
Sbjct: 324  PPRR-SPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSPSPRRIPRKISR 382

Query: 965  TASPKRXAPXKRTASPKGTAXXKETXPQKNPPPKRT 1072
            + SPKR    KR++S   ++    + P   PPP++T
Sbjct: 383  SRSPKRPLRGKRSSSNSSSS----SSPPPPPPPRKT 414


>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 32.3 bits (70), Expect = 0.85
 Identities = 16/77 (20%), Positives = 33/77 (42%)
 Frame = +2

Query: 518 KRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDAEKNRRKKTANVEERRQRSPKTAIV 697
           +R    WE  +++ +   + +E  KD + RE +  AEK   +    + E   +  +   V
Sbjct: 398 ERESDRWERERMEQKDRERNKEKDKDHIKREPRTGAEKEISQNEKELGEASAKPSEQEYV 457

Query: 698 EERRLPSPKKEDCTXDE 748
              +    + ++C  DE
Sbjct: 458 APEQKKQNEPDNCEKDE 474


>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 32.3 bits (70), Expect = 0.85
 Identities = 16/77 (20%), Positives = 33/77 (42%)
 Frame = +2

Query: 518 KRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDAEKNRRKKTANVEERRQRSPKTAIV 697
           +R    WE  +++ +   + +E  KD + RE +  AEK   +    + E   +  +   V
Sbjct: 398 ERESDRWERERMEQKDRERNKEKDKDHIKREPRTGAEKEISQNEKELGEASAKPSEQEYV 457

Query: 698 EERRLPSPKKEDCTXDE 748
              +    + ++C  DE
Sbjct: 458 APEQKKQNEPDNCEKDE 474


>At4g11100.1 68417.m01802 expressed protein
          Length = 287

 Score = 32.3 bits (70), Expect = 0.85
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 515 IKRYQKTWEA*KLDVRRTTKKRENKKDDLTRE-MKVDAEKNRRKKTANVEERRQRSPKTA 691
           IK  ++ +EA KL      K+ E     L  E MK   EK + +KT    ++   S +TA
Sbjct: 34  IKHAEEAYEAIKLHHENKAKELEVSNKRLLEECMKERREKAKVRKTFEEMKKTMESERTA 93

Query: 692 IVEE 703
           IV+E
Sbjct: 94  IVDE 97


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
            (SR45) similar to arginine/serine-rich protein GI:6601502
            from [Arabidopsis thaliana]
          Length = 407

 Score = 32.3 bits (70), Expect = 0.85
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 6/156 (3%)
 Frame = +2

Query: 623  AEKNRRKKTANVEERRQRSPKTAIVEERRLPSPKKEDCTXDEG*LHRR*KMTAPPRKMTA 802
            A  +R +  ++   RR RSP        R  SP +         L RR   + PPR++ +
Sbjct: 264  ASPSRGRSPSSPPPRRYRSPPRGSPRRIR-GSPVRRRSPLP---LRRR---SPPPRRLRS 316

Query: 803  PPRR*LHXREEXSQPAEKXXRRNCTAEKRLXXXXEXAPXXRNXIXXKXLHPR------XE 964
            PPRR    R     P  +  R   ++              R+        PR        
Sbjct: 317  PPRR-SPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSPSPRRIPRKISR 375

Query: 965  TASPKRXAPXKRTASPKGTAXXKETXPQKNPPPKRT 1072
            + SPKR    KR++S   ++    + P   PPP++T
Sbjct: 376  SRSPKRPLRGKRSSSNSSSS----SSPPPPPPPRKT 407


>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
            factor-related similar to CCAAT-box-binding transcription
            factor (CCAAT-binding factor) (CBF) (Swiss-Prot:Q03701)
            [Homo sapiens], GB:P53569 [Mus musculus]
          Length = 1056

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
 Frame = +1

Query: 469  IRNHKMTTDGNLISIDQKIPKNVGSLKTGREKNN*KEGEQER*FNEGNESRRRKEP---- 636
            + + +M TD ++  ID +   NV    TG   ++  +G+  R   +  E R+RK P    
Sbjct: 959  VSDAEMDTDMDMDLIDDEDDNNVDDDGTGDGGDDDSDGDDGRSKKKKKEKRKRKSPFASL 1018

Query: 637  ----------EKEDCKC*RKKTAIAEDCNRRRKKTAIAEE 726
                      EKED K  RK T  +E   +++KK + A E
Sbjct: 1019 EEYKHLIDQDEKEDSKTKRKAT--SEPTKKKKKKKSKASE 1056


>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           SEC14-like protein 2 (Alpha-tocopherol associated
           protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
           taurus}; similar to GI:807956 from [Saccharomyces
           cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
           contains Pfam PF03765 : CRAL/TRIO, N-terminus
          Length = 573

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
 Frame = +2

Query: 527 QKTWEA*KLDVRRTTKKRENKKDDLTREMKVD--------AEKNRRKKTANVEERRQRSP 682
           +KT E    +  +  +K E KK++ T E+KV+        AE+ +  + A VE + +  P
Sbjct: 123 EKTEEKKTEEETKEEEKTEEKKEETTTEVKVEEEKPAVPAAEEEKSSEAAPVETKSEEKP 182

Query: 683 KTAIVEERRLPSPKKEDCTXDEG*LHRR*KMTAPPRKMTAP 805
           +          S  +ED T     +       +PP    AP
Sbjct: 183 EEKAEVTTEKASSAEEDGTKTVEAIEESIVSVSPPESAVAP 223


>At5g46020.1 68418.m05659 expressed protein
          Length = 164

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 16/69 (23%), Positives = 37/69 (53%)
 Frame = +2

Query: 527 QKTWEA*KLDVRRTTKKRENKKDDLTREMKVDAEKNRRKKTANVEERRQRSPKTAIVEER 706
           QKT +A  LD  +TT+    ++++L ++ +      R ++    E+ R+   + A++ ++
Sbjct: 82  QKTLKAKDLDASKTTELSRREREELEKQ-RAHERYMRLQEQGKTEQARKDLDRLALIRQQ 140

Query: 707 RLPSPKKED 733
           R  + KK +
Sbjct: 141 REEAAKKRE 149


>At5g36650.1 68418.m04383 hypothetical protein
          Length = 158

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 642 RRLQMLKKEDSDRRRLQSSKKEDCHRRRRKTAPPMKDDCT 761
           RR+     E+  RR L+   ++DC RRR  T    K D T
Sbjct: 33  RRVATAAGEEESRRLLEKKSRDDCRRRRTATEKKKKLDRT 72


>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 1293

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 569 TKKRENKKDD--LTREMKVDAEKNRRKKTANVEERRQRSPKTAIVEERRLPSPKKED 733
           T+K    KD      +++VD +K +R+K A VEE R ++P       ++    KKED
Sbjct: 818 TRKEAATKDPSYAAAQLEVDTKKGKRRKQATVEENRLQTPSV-----KKAKVSKKED 869


>At4g26630.1 68417.m03837 expressed protein
          Length = 763

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 11/171 (6%)
 Frame = +2

Query: 554  DVRRTTKKRENKKDDLTREMKVDAEKNRRKKTANVEERRQRSPKTAIVE--ERRLPSPKK 727
            +  +  KK     DD + E K + EK   +K    EE+++   +  I +  E   P P +
Sbjct: 507  EATKVVKKSLAHSDDESEEEKEEEEKQEEEKAEEKEEKKEEENENGIPDKSEDEAPQPSE 566

Query: 728  EDCTXDEG*LH---------RR*KMTAPPRKMTAPPRR*LHXREEXSQPAEKXXRRNCTA 880
             +   DE   H         R  +++A  ++     R         S P EK  ++  +A
Sbjct: 567  SE-EKDESEEHSEEETTKKKRGSRLSAGKKESAGRARNKKAVVAAKSSPPEKITQKRSSA 625

Query: 881  EKRLXXXXEXAPXXRNXIXXKXLHPRXETASPKRXAPXKRTASPKGTAXXK 1033
            +++            +    K  +P   + +P + A  ++     G    K
Sbjct: 626  KRKKTDDDSDTSPKASSKRKKSENPIKASPAPSKSASKEKPVKRAGKGKDK 676


>At5g41320.1 68418.m05022 expressed protein 
          Length = 515

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 569 TKKRENKKDDLTREMKVDAEKNRRKKTANVEERRQR 676
           T+KR +KKD+ T+  KV   + R+ KT  VE+ +++
Sbjct: 63  TRKRRSKKDE-TKPEKVKQVRKRKPKTVCVEDNKKK 97


>At4g35940.1 68417.m05113 expressed protein
          Length = 451

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 557 VRRTTKKRENKKDDLT-REMKVDAEKNRRKKTANVEERRQRSPKTAIVEERRLPSPKKED 733
           V    KK + +KD  + ++ K D ++ + KK    ++R++R  K    E+R     +KED
Sbjct: 30  VEEKAKKEQRRKDRRSDKKDKKDKKERKEKKEKKEKKRKEREGKEVGSEKRSHKRRRKED 89


>At5g57120.1 68418.m07132 expressed protein weak similarity to
           SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
          Length = 330

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 554 DVRRTTKKRENKKDDLTREMKVD--AEKNRRKKTANVEERRQRSPKTAIVE 700
           D  + +KKR+  + + T+E   D   E  RRKK  NV E  +   +T + E
Sbjct: 169 DKEKVSKKRKRSEPEETKEETEDDDEESKRRKKEENVVENDEGVQETPVKE 219


>At3g51650.1 68416.m05664 expressed protein
          Length = 826

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 569 TKKRENKKDDLTREMKVDAEKNRRKKTANVEERRQRSPKTAIVEERR 709
           T   E++ +   R+ +   +    K+ +  EER+QR     +VEERR
Sbjct: 245 TSSHESRVEKARRKAEEKRQARLEKEHSEEEERKQREEVARLVEERR 291


>At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMPA1)
           similar to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 532

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +2

Query: 578 RENKKDDLTR---EMKVDAEKNRRKKTANVEERRQRSPKTAIVEERR 709
           R N K ++ R   ++ VDAE+ RR++  N+ E R+   + +++++RR
Sbjct: 4   RPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRR 50


>At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMPA1)
           similar to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 532

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +2

Query: 578 RENKKDDLTR---EMKVDAEKNRRKKTANVEERRQRSPKTAIVEERR 709
           R N K ++ R   ++ VDAE+ RR++  N+ E R+   + +++++RR
Sbjct: 4   RPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRR 50


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +1

Query: 547 KTGREKNN*KEGEQER*FNEGNESRRRKEPEKEDCK-C*RKKTAIAEDCNRRRKKTAIAE 723
           K  RE+   K+ E+ER  +     R R+E EKE  K   R++    E   R R+K   + 
Sbjct: 135 KRDREREERKDKEREREKDRERREREREEREKERVKERERREREDGERDRREREKERGSR 194

Query: 724 EGRLHXR*RMTAPPMKDD 777
             R   R R       DD
Sbjct: 195 RNRERERSREVGNEESDD 212


>At2g16485.1 68415.m01889 expressed protein ; expression supported
           by MPSS
          Length = 617

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 572 KKRENKKDDLTREMKVDAEKNRRKKTANVEERRQRSPKTAIVEERR 709
           K  + +KDD   ++  D E +R    A++EE R+      + E ++
Sbjct: 446 KDEDQEKDDNMTDLAEDVENHRDSSVADIEEGREDHEDMGVTETQK 491


>At1g29570.1 68414.m03616 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 321

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 518 KRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDA-EKNRRKKTANVEERRQR 676
           + +   W   +  + R  ++R   +++L  + + D+ E+ RR+   N++E+RQR
Sbjct: 160 RHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQR 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,916,674
Number of Sequences: 28952
Number of extensions: 407152
Number of successful extensions: 1391
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4000015680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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