Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H01_e584_15.seq
         (1573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   122   2e-28

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  122 bits (293), Expect = 2e-28
 Identities = 54/75 (72%), Positives = 68/75 (90%)
 Frame = +1

Query: 211 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKXFEIIDFFLGPSLNDEVLKIMPVQ 390
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK ++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 391 KQTRAGQRTRFKAFV 435
           KQTRAGQRTRFKAFV
Sbjct: 87  KQTRAGQRTRFKAFV 101



 Score = 60.5 bits (140), Expect = 6e-10
 Identities = 30/70 (42%), Positives = 46/70 (65%)
 Frame = +2

Query: 440 IGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVPXRFIGVTKIGKPXTXALQGHXES 619
           IGD++GH+GLG+K +KEV  AIRG II+ KL+++P+   + G T +G P T  ++   + 
Sbjct: 103 IGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWG-TALGDPHTVPVKVSGK- 160

Query: 620 VGSXTXXIDP 649
            GS T  + P
Sbjct: 161 CGSVTVRLVP 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,574
Number of Sequences: 5004
Number of extensions: 41905
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 886031778
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)