Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_H01_e584_15.seq
(1573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0756 + 5819367-5820038,5820847-5821005 109 8e-24
03_06_0386 + 33555682-33556344,33557138-33557299 107 2e-23
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 36 0.066
05_01_0214 - 1615519-1616775 34 0.35
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 33 0.82
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142... 32 1.1
03_05_0292 + 22846273-22846377,22847161-22847823 31 3.3
03_02_0261 - 6933962-6934513 31 3.3
09_04_0377 + 17086775-17088310 30 4.4
03_01_0031 + 292335-292844 30 4.4
05_03_0511 + 14907475-14907933,14907948-14908178,14908520-149088... 30 5.8
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 109 bits (261), Expect = 8e-24
Identities = 62/138 (44%), Positives = 80/138 (57%)
Frame = +1
Query: 211 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKXFEIIDFFLGPSLNDEVLKIMPVQ 390
++++++WVPVTKLGRLV+E KI K+E IYL SLP+K +I++ L P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE-QLVPGLKDEVMKITPVQ 99
Query: 391 KQTRAGQRTRFKAFVCYR**QWTHWFGCEXQQGSGXCYPWXHHTRQIGCXTCXAXVYWGN 570
KQTRAGQRTRFKAFV G + + ++ YWGN
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRG-YWGN 158
Query: 571 KNRKAXHXCLARXXGKCG 624
K K H + GKCG
Sbjct: 159 KIGKP-HTVPCKVTGKCG 175
Score = 65.7 bits (153), Expect = 9e-11
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = +2
Query: 440 IGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVPXRFIGVTKIGKPXT 592
+GD +GH+GLGVK +KEV AIRG IILAKL+V+PV + G KIGKP T
Sbjct: 116 VGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWG-NKIGKPHT 165
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 107 bits (258), Expect = 2e-23
Identities = 60/138 (43%), Positives = 80/138 (57%)
Frame = +1
Query: 211 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKXFEIIDFFLGPSLNDEVLKIMPVQ 390
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+K +I++ L P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVE-TLVPGLKDEVMKITPVQ 96
Query: 391 KQTRAGQRTRFKAFVCYR**QWTHWFGCEXQQGSGXCYPWXHHTRQIGCXTCXAXVYWGN 570
KQTRAGQRTRFKAFV G + + ++ YWGN
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRG-YWGN 155
Query: 571 KNRKAXHXCLARXXGKCG 624
K + H + GKCG
Sbjct: 156 KIGQP-HTVPCKVTGKCG 172
Score = 68.5 bits (160), Expect = 1e-11
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +2
Query: 440 IGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVPXRFIGVTKIGKPXT 592
+GDNNGH+GLGVK +KEV AIRG IILAKL+V+PV + G KIG+P T
Sbjct: 113 VGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWG-NKIGQPHT 162
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 36.3 bits (80), Expect = 0.066
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 111 WRFP-RRLWIPWWRQRSWRPTWSWSRTRARPWPWQGRP 221
W F RR WIPW +R+ + WS S T R W Q RP
Sbjct: 184 WSFEWRRGWIPWEARRASKSAWSQSSTGTRKW-MQYRP 220
>05_01_0214 - 1615519-1616775
Length = 418
Score = 33.9 bits (74), Expect = 0.35
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 208 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVH 104
HGHG DHDH G D HH G+ H H
Sbjct: 190 HGHGHGHSHDHDH-GGSDHDHHHHEDQEHGHVHHH 223
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 32.7 bits (71), Expect = 0.82
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 431 LFAIGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVP 550
+ +GD GH+G+GV +KEV AI + + ++ VP
Sbjct: 195 IVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNLVTVP 234
>05_01_0197 -
1417672-1417899,1418921-1418974,1419267-1419552,
1421768-1422291
Length = 363
Score = 32.3 bits (70), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 105 WTWRFPRRLWIPWWRQRSWRP 167
W WR P RL W R RSW P
Sbjct: 140 WLWRRPSRLLSKWRRGRSWAP 160
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 30.7 bits (66), Expect = 3.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 147 RQRSWRPTWSWSRTRAR 197
R+RSWR WSW R R R
Sbjct: 157 RRRSWRRQWSWRRRRRR 173
>03_02_0261 - 6933962-6934513
Length = 183
Score = 30.7 bits (66), Expect = 3.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 147 RQRSWRPTWSWSRTRAR 197
R+RSWR WSW R R R
Sbjct: 116 RRRSWRRQWSWRRRRRR 132
>09_04_0377 + 17086775-17088310
Length = 511
Score = 30.3 bits (65), Expect = 4.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +3
Query: 111 WRFPRRLWIPWWRQRSWRPTWSWSRTRARPWPWQGRPERVGASHQAWS 254
+R RR W P+ R R W+R R P P +G GA AWS
Sbjct: 62 YRDRRRQWSPYHRDRGRDVEREWARDRDHPAPRRGGG---GAGAGAWS 106
>03_01_0031 + 292335-292844
Length = 169
Score = 30.3 bits (65), Expect = 4.4
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 132 WIPWWRQRSWRPTWSWSR 185
W W R+R WR W W R
Sbjct: 39 WRRWRRRRGWRRRWGWQR 56
>05_03_0511 +
14907475-14907933,14907948-14908178,14908520-14908855,
14909571-14910126,14910217-14910424,14910519-14910885,
14910988-14911110
Length = 759
Score = 29.9 bits (64), Expect = 5.8
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 127 RRGNRHVHRLELRPPLLNDQCSLVPXSXSPGEST 26
RRG H HR PPLL + P S SP +
Sbjct: 31 RRGRGHGHRPRRGPPLLRAASTAAPPSSSPSSQS 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,320,067
Number of Sequences: 37544
Number of extensions: 341386
Number of successful extensions: 875
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5081723304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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