Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H01_e584_15.seq
         (1573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              124   1e-28
SB_59101| Best HMM Match : PT (HMM E-Value=0.026)                      30   4.4  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  124 bits (300), Expect = 1e-28
 Identities = 71/132 (53%), Positives = 79/132 (59%)
 Frame = +1

Query: 229 WVPVTKLGRLVREGKIDKLESIYLFSLPIKXFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 408
           WVPVTKLGRLV++ KI  LE IYLFSLPIK FEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67

Query: 409 QRTRFKAFVCYR**QWTHWFGCEXQQGSGXCYPWXHHTRQIGCXTCXAXVYWGNKNRKAX 588
           QRTRFKAFV           G +  +             ++         YWGNK  K  
Sbjct: 68  QRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG-YWGNKIGKP- 125

Query: 589 HXCLARXXGKCG 624
           H    +  GKCG
Sbjct: 126 HTVPCKVTGKCG 137



 Score = 71.7 bits (168), Expect = 1e-12
 Identities = 36/52 (69%), Positives = 41/52 (78%)
 Frame = +2

Query: 437 AIGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVPXRFIGVTKIGKPXT 592
           AIGD+NGH+GLGVK SKEV  AIRG IILAKL+V+PV   + G  KIGKP T
Sbjct: 77  AIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWG-NKIGKPHT 127


>SB_59101| Best HMM Match : PT (HMM E-Value=0.026)
          Length = 386

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +3

Query: 144 WRQRSWRPTWSWSRTRARPW------PWQGRPERVGASHQAWSPCP 263
           W+Q + +P   W +  ++PW      PWQ  P R  ++   WSP P
Sbjct: 316 WQQGNDQP---WQQNNSQPWQQNIVQPWQQMPTRSLSNATPWSPQP 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,002,898
Number of Sequences: 59808
Number of extensions: 362495
Number of successful extensions: 897
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5141146326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)