Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_H01_e584_15.seq
         (1573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   104   1e-22

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  104 bits (250), Expect = 1e-22
 Identities = 55/74 (74%), Positives = 58/74 (78%)
 Frame = +1

Query: 214 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKXFEIIDFFLGPSLNDEVLKIMPVQK 393
           E + EW PVTKLGRLV+E KI  LE IYL SLPIK FEIID  L  +L DEVLKI PVQK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIID-ALCSNLKDEVLKISPVQK 110

Query: 394 QTRAGQRTRFKAFV 435
           QT AGQRTRFKAFV
Sbjct: 111 QTTAGQRTRFKAFV 124



 Score = 64.1 bits (149), Expect = 3e-10
 Identities = 33/52 (63%), Positives = 38/52 (73%)
 Frame = +2

Query: 437 AIGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVPXRFIGVTKIGKPXT 592
           AIGD+ GH+GLGVK SKEV  AIRG I+ AKLAV+PV   + G  KIG P T
Sbjct: 125 AIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWG-NKIGLPHT 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,786,756
Number of Sequences: 27780
Number of extensions: 249785
Number of successful extensions: 590
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4545957324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)