Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_H01_e584_15.seq
(1573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 125 7e-29
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 119 5e-27
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 119 5e-27
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 119 5e-27
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 119 5e-27
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 117 2e-26
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 33 0.68
At1g12170.1 68414.m01409 F-box family protein contains F-box dom... 31 1.6
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 125 bits (302), Expect = 7e-29
Identities = 66/136 (48%), Positives = 83/136 (61%)
Frame = +1
Query: 217 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKXFEIIDFFLGPSLNDEVLKIMPVQKQ 396
++++WVPVTKLGRLV+EGKI K+E IYL SLP+K ++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 397 TRAGQRTRFKAFVCYR**QWTHWFGCEXQQGSGXCYPWXHHTRQIGCXTCXAXVYWGNKN 576
TRAGQRTRFKAF+ G + + ++ YWGNK
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRG-YWGNKI 159
Query: 577 RKAXHXCLARXXGKCG 624
K H + GKCG
Sbjct: 160 GKP-HTVPCKVTGKCG 174
Score = 68.9 bits (161), Expect = 8e-12
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +2
Query: 440 IGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVPXRFIGVTKIGKPXT 592
+GD+NGH+GLGVK SKEV AIRG IILAKL+V+P+ + G KIGKP T
Sbjct: 115 VGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWG-NKIGKPHT 164
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 119 bits (287), Expect = 5e-27
Identities = 65/136 (47%), Positives = 80/136 (58%)
Frame = +1
Query: 217 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKXFEIIDFFLGPSLNDEVLKIMPVQKQ 396
++ +WVPVTKLGRLV + KI KLE IYL SLP+K ++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 397 TRAGQRTRFKAFVCYR**QWTHWFGCEXQQGSGXCYPWXHHTRQIGCXTCXAXVYWGNKN 576
TRAGQRTRFKAFV G + + ++ YWGNK
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRG-YWGNKI 167
Query: 577 RKAXHXCLARXXGKCG 624
K H + GKCG
Sbjct: 168 GKP-HTVPCKVTGKCG 182
Score = 68.9 bits (161), Expect = 8e-12
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = +2
Query: 440 IGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVPXRFIGVTKIGKPXT 592
+GD NGH+GLGVK SKEV AIRG IILAKL+V+PV + G KIGKP T
Sbjct: 123 VGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG-NKIGKPHT 172
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 119 bits (287), Expect = 5e-27
Identities = 65/136 (47%), Positives = 80/136 (58%)
Frame = +1
Query: 217 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKXFEIIDFFLGPSLNDEVLKIMPVQKQ 396
++ +WVPVTKLGRLV + KI KLE IYL SLP+K ++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 397 TRAGQRTRFKAFVCYR**QWTHWFGCEXQQGSGXCYPWXHHTRQIGCXTCXAXVYWGNKN 576
TRAGQRTRFKAFV G + + ++ YWGNK
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRG-YWGNKI 167
Query: 577 RKAXHXCLARXXGKCG 624
K H + GKCG
Sbjct: 168 GKP-HTVPCKVTGKCG 182
Score = 68.9 bits (161), Expect = 8e-12
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = +2
Query: 440 IGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVPXRFIGVTKIGKPXT 592
+GD NGH+GLGVK SKEV AIRG IILAKL+V+PV + G KIGKP T
Sbjct: 123 VGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG-NKIGKPHT 172
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 119 bits (287), Expect = 5e-27
Identities = 65/136 (47%), Positives = 80/136 (58%)
Frame = +1
Query: 217 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKXFEIIDFFLGPSLNDEVLKIMPVQKQ 396
++ +WVPVTKLGRLV + KI KLE IYL SLP+K ++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 397 TRAGQRTRFKAFVCYR**QWTHWFGCEXQQGSGXCYPWXHHTRQIGCXTCXAXVYWGNKN 576
TRAGQRTRFKAFV G + + ++ YWGNK
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRG-YWGNKI 167
Query: 577 RKAXHXCLARXXGKCG 624
K H + GKCG
Sbjct: 168 GKP-HTVPCKVTGKCG 182
Score = 68.9 bits (161), Expect = 8e-12
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = +2
Query: 440 IGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVPXRFIGVTKIGKPXT 592
+GD NGH+GLGVK SKEV AIRG IILAKL+V+PV + G KIGKP T
Sbjct: 123 VGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG-NKIGKPHT 172
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 119 bits (287), Expect = 5e-27
Identities = 65/136 (47%), Positives = 80/136 (58%)
Frame = +1
Query: 217 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKXFEIIDFFLGPSLNDEVLKIMPVQKQ 396
++ +WVPVTKLGRLV + KI KLE IYL SLP+K ++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 397 TRAGQRTRFKAFVCYR**QWTHWFGCEXQQGSGXCYPWXHHTRQIGCXTCXAXVYWGNKN 576
TRAGQRTRFKAFV G + + ++ YWGNK
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRG-YWGNKI 167
Query: 577 RKAXHXCLARXXGKCG 624
K H + GKCG
Sbjct: 168 GKP-HTVPCKVTGKCG 182
Score = 68.9 bits (161), Expect = 8e-12
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = +2
Query: 440 IGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVPXRFIGVTKIGKPXT 592
+GD NGH+GLGVK SKEV AIRG IILAKL+V+PV + G KIGKP T
Sbjct: 123 VGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG-NKIGKPHT 172
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 117 bits (282), Expect = 2e-26
Identities = 63/136 (46%), Positives = 80/136 (58%)
Frame = +1
Query: 217 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKXFEIIDFFLGPSLNDEVLKIMPVQKQ 396
++++WVPVTKLGRLV G I ++E IYL SLP+K ++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 397 TRAGQRTRFKAFVCYR**QWTHWFGCEXQQGSGXCYPWXHHTRQIGCXTCXAXVYWGNKN 576
TRAGQRTRFKAFV G + + ++ YWGNK
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRG-YWGNKI 168
Query: 577 RKAXHXCLARXXGKCG 624
K H + GKCG
Sbjct: 169 GKP-HTVPCKVTGKCG 183
Score = 68.9 bits (161), Expect = 8e-12
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = +2
Query: 440 IGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVPXRFIGVTKIGKPXT 592
+GD NGH+GLGVK SKEV AIRG IILAKL+V+PV + G KIGKP T
Sbjct: 124 VGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG-NKIGKPHT 173
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 32.7 bits (71), Expect = 0.68
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 431 LFAIGDNNGHIGLGVKXSKEVXXAIRGXIILAKLAVLPVP 550
+ +GD G++G+G +KEV A++ I A+ ++ VP
Sbjct: 172 IVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVP 211
>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
Pfam:PF00646
Length = 364
Score = 31.5 bits (68), Expect = 1.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 105 WTWRFPRRLWIPWWRQRSW 161
W+WR +W PW RQ W
Sbjct: 107 WSWRKKAAIWNPWLRQTKW 125
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,014
Number of Sequences: 28952
Number of extensions: 245957
Number of successful extensions: 615
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4231341888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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